Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20084
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430...    30   2.2  
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    29   2.8  
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437...    29   2.8  
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437...    29   5.0  
12_01_0378 - 2946916-2947590                                           28   6.6  
11_01_0395 + 2999855-2999920,3000605-3002191                           28   6.6  
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    28   6.6  

>01_05_0487 +
           22641133-22642182,22642276-22642863,22642961-22643068,
           22643582-22643692,22643784-22643849,22644858-22644917,
           22644990-22645119,22645159-22645547,22645783-22645902,
           22645957-22646022,22646190-22646255
          Length = 917

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = -1

Query: 448 ACLVLAVAVGRSA--IVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPD-DVLGA 278
           A LV+ +  G  A  I +LNI+ + +++ + +++K++R+FG       W+  P+  +  A
Sbjct: 512 AILVVDIMRGIQAQTIESLNILKRHKADFIIVLNKVDRLFG-------WKRCPNAPIKKA 564

Query: 277 LEPKLIGVSMQF 242
           L+ +  GV M+F
Sbjct: 565 LKQQAEGVKMEF 576


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 461 WKLIALWENNKVYFKI*TLNVTNTWYWESALTGTATIWPSEST 589
           WK I  W       +   L  + T Y +S L     IWP +ST
Sbjct: 403 WKDIGFWNEGNGILRQLNLGKSTTKYADSVLDLNPVIWPGKST 445


>06_01_0605 +
           4373697-4373872,4374840-4374876,4375296-4375399,
           4375942-4376137,4376385-4376451,4376895-4376998,
           4377090-4377174,4377309-4377369,4377694-4377825,
           4377924-4377993,4379261-4379413,4379583-4379694,
           4379779-4379920,4380023-4380140,4380862-4380957,
           4381061-4381189
          Length = 593

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 192 SEVITNVVNKLIRNN--KMNCMETPINFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 362
           SE I+++ N+L R+   K+ C     N  S A      I S+L S LS+  TRL  CTS
Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400


>04_04_0190 -
           23442824-23442846,23442891-23442949,23443613-23443737,
           23443767-23443901,23444195-23444301,23444488-23444566,
           23444856-23444942,23445045-23445281,23445783-23446128,
           23446486-23446694
          Length = 468

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 317 TQLGNNPGRCPWSPGAKVDRRLHAVHLVVSYQF 219
           T  G  P  CP S  AKV+      HLV++Y++
Sbjct: 411 TPFGGGPRLCPGSELAKVEAAFFLHHLVLNYRW 443


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 9   GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 149
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


>11_01_0395 + 2999855-2999920,3000605-3002191
          Length = 550

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 162 KSKHLYEEKKSEVITNVVNKLIRNNKMNCMETPINFGSRAPRTSSGIVSQLSSDLSSPKT 341
           K + ++E   S +IT+   K  R        TPI+F SR+     G+V  L + ++  + 
Sbjct: 152 KDEVIHEINSSALITSNSAKRFRFADALRKHTPISFASRSTTNLKGVVEDLETKIADMRE 211

Query: 342 RLSLCTS 362
            + L  S
Sbjct: 212 FVMLLGS 218


>06_03_0095 -
           16575938-16576585,16577028-16577219,16577294-16577392,
           16577496-16577618,16577717-16577929,16578143-16578251,
           16578339-16578427,16578604-16578880,16578974-16579084,
           16579160-16580508,16581218-16581631
          Length = 1207

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = -1

Query: 403 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLIGVSMQFILLFRI 224
           +L +IA   S    +  K + + GE K    W   PDD     +PK   ++  F LL  +
Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372

Query: 223 SLFTTFVMTSLFFS 182
            L++ F+  SL+ S
Sbjct: 373 MLYSYFIPISLYIS 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,437
Number of Sequences: 37544
Number of extensions: 341673
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)