Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20084
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17)                    30   1.7  
SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)                 30   2.2  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   29   5.1  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17)
          Length = 362

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -3

Query: 593 TLLTPKAIWSPFQLVPTPNTKYWLRSVFRS*SRPCCSPTERLTSS 459
           T   P  IW  F+L+PTP      RS  RS   PC SP   ++SS
Sbjct: 33  TATVPMDIWKKFELLPTPP-----RSPSRS---PCDSPVHMISSS 69


>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
          Length = 453

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 186 KKSEVITNVVNKLIRNNKMNCMETPINFGSRAPRTSSGIVSQLSSD 323
           K+  ++TN+ +  I  N++N  +  INF  R     S + +++SSD
Sbjct: 214 KEKMILTNLKSPRITANQLNVYKNQINFLKRMFELQSALEAEVSSD 259


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 439 QDKPESQLEVNRSVGEQQGLLQDLNTERNQY 531
           + KP S    NR+ G ++G +QD   +R  Y
Sbjct: 354 ESKPSSSSSKNRNTGLERGRVQDFGRDRRDY 384


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 79  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 210
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,293,598
Number of Sequences: 59808
Number of extensions: 396993
Number of successful extensions: 1151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)