Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20084
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    28   5.9  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   5.9  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 141 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 251
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 141 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 251
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 267 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 374
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +2

Query: 428 DGKDKTSPRVSWKLIALWENNKVYFKI*TLNVTNT 532
           D KD+ +P VS KL+AL + NK  FK  T    NT
Sbjct: 120 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 153


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +2

Query: 428 DGKDKTSPRVSWKLIALWENNKVYFKI*TLNVTNT 532
           D KD+ +P VS KL+AL + NK  FK  T    NT
Sbjct: 611 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 644


>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 138 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMETPINFGSRA---PRTSSGIVS 308
           +DY S +       +E      T  +NK++  N +  +E+P   G+R    PRT   I +
Sbjct: 756 SDYSSVLNSPASTSQESTGMRDTQRLNKVLSKNNIGELESPRLNGTRVLSPPRTRHQISN 815

Query: 309 QLSSD 323
            + SD
Sbjct: 816 AIDSD 820


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 179 RGEEERSHHKCREQTDTK---QQDELHGDAYQLWLQGSKDIVRDCFPVEFRLIFA 334
           R EE+    K R QT T+   Q+ E+  +  ++ L+ S+D+ RDC  ++    FA
Sbjct: 41  RIEEKVLEIKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCIDMDAYFA 95


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 279 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 374
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 286 LGALEPKLIGVSMQFILLFRISLFTTFVMTSLFFSSYK 173
           LGAL    +G     I LF +S FTT  +  L FS YK
Sbjct: 194 LGALIEGELGT---LISLFNVSPFTTVTVDQLLFSGYK 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,114
Number of Sequences: 27780
Number of extensions: 284778
Number of successful extensions: 982
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)