Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20084
(727 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.96
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.96
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.96
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.96
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 25 0.96
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 24 1.7
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 24 1.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.2
AJ555537-1|CAD88245.1| 210|Apis mellifera putative chemosensory... 23 3.9
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 6.8
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 21 9.0
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 21 9.0
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 21 9.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.0
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.96
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 335
LP DS L L V + S V LN++A+ T V + F
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.96
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 335
LP DS L L V + S V LN++A+ T V + F
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.96
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 335
LP DS L L V + S V LN++A+ T V + F
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 0.96
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 335
LP DS L L V + S V LN++A+ T V + F
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 329
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.6 bits (51), Expect = 0.96
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 433 QGQDKPESQLEVNRSVGEQQGLLQDLNTERNQYLVLGVGTNWNGDHMAFGV 585
Q DK ++ + + +QQ L+Q L ++QYL L G G + + G+
Sbjct: 165 QTADKKKASAPLQQLALQQQRLIQQLQITQSQYL-LQQGLGLQGHNPSSGL 214
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 185 EEERSHHKCREQTDTKQQDELHGD 256
+EER K R+Q++ + LH D
Sbjct: 181 QEERQRTKERDQSEVESTSSLHSD 204
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 185 EEERSHHKCREQTDTKQQDELHGD 256
+EER K R+Q++ + LH D
Sbjct: 181 QEERQRTKERDQSEVESTSSLHSD 204
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQ 383
LP DS L L V + S V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQ 383
LP DS L L V + S V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQ 383
LP DS L L V + S V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 466 LPADSRACLVLAVAVGRSAIVALNIIAQ 383
LP DS L L V + S V LN++A+
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAE 313
>AJ555537-1|CAD88245.1| 210|Apis mellifera putative chemosensory
receptor 2 protein.
Length = 210
Score = 22.6 bits (46), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 227 TKQQDELHGDAYQLWLQGSKDIVR 298
TK+Q+ L A + W++ K IVR
Sbjct: 92 TKKQEMLVRSAIKYWVERHKHIVR 115
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 323 LIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAYGDGKDKTSPRVS 460
L E IK+ ++ + N +G P GDG + SP+ S
Sbjct: 307 LCLTERQIKIWFQNRRMKWKKENKSKGT---PGSGDGDTEISPQTS 349
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 90 VPNDILEEQLYNSVVVADYDSAVEK 164
VP+++ + LYN +VV++ S K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.4 bits (43), Expect = 9.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 475 SVGEQQGLLQDLNTERNQYLVLGVGTNWNGDHMAFGVNSVDS 600
S G + L L+TE+ + T W HM+ +++DS
Sbjct: 181 SHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSESTIDS 222
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 90 VPNDILEEQLYNSVVVADYDSAVEK 164
VP+++ + LYN +VV++ S K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 9.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 624 LQVPLGSETIDAVDSEGHMVAVPVSADSQYQVLVT 520
L+ P+G+E+ V S G + + D + Q+L+T
Sbjct: 38 LERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLIT 72
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,395
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 19
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -