Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20084
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.15 
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   1.0  
At1g15320.1 68414.m01833 hypothetical protein                          29   2.4  
At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    29   4.1  
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica...    27   9.6  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   9.6  
At1g59077.1 68414.m06670 hypothetical protein                          27   9.6  
At1g58766.1 68414.m06659 hypothetical protein                          27   9.6  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   9.6  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 12  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 191
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 192 SEVITNV 212
             +  N+
Sbjct: 214 GSIAPNL 220


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 282 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 374
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At1g15320.1 68414.m01833 hypothetical protein
          Length = 307

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 179 RGEEERSHHKCREQTDTKQQDELHGDAYQLWLQGSKDI 292
           R   ERSH   + ++ TK  DEL GD Y+LW Q    I
Sbjct: 58  RSHAERSH---QHESFTKG-DELSGDLYELWRQEQNSI 91


>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 526 QYLVLGVGTNWNGDHMAFGVNSVDSFRAQWYLQPAKYDNDVLFYIY 663
           +YL +    N       F +NS+++FR +WY    + D D L  I+
Sbjct: 344 EYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388


>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
           to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
          Length = 802

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 511 NTERNQYLVLGVGTNWNGDHMAF 579
           N   N  L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 105  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 212
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 105 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 212
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 105 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 212
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +1

Query: 58   SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 153
            +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,071,895
Number of Sequences: 28952
Number of extensions: 270503
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)