Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20083
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   3.6  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    26   4.8  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   4.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.3  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   6.3  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   6.3  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   8.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.4  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -2

Query: 429 DLISWKFITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVI--FGTNTADTTREQWF 256
           D  +WK I+L E  R+++        QYL   S+   N   +V   +G++   T  E   
Sbjct: 535 DHSTWKSISLVERARIHYLTAFKPPKQYLPKCSSPKDNRDLKVFADYGSDKLPTVEESLR 594

Query: 255 PSPR 244
            SP+
Sbjct: 595 NSPK 598


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 137 VSKCHTVSRSVHNPTELQSIVVLAIVDEEQDVVFVLRGLGNH 262
           V++CH+ +R+  +P EL +      +   QD  FVL+G  N+
Sbjct: 119 VTRCHSANRTALHPVELFATNFGGRLKTRQD--FVLKGQQNN 158


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -1

Query: 244 KYENDVLFFIYNREYNDALKLGRIVDASGD 155
           +  NDV  + ++++ N+  K+G++VDA G+
Sbjct: 339 RVNNDVEAYQWSQKENEWKKIGQVVDAVGN 368


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 402  LWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQWFP 253
            LW N  V +   N    QYL   ST+     + ++F  N  D + +  +P
Sbjct: 1921 LWSNQIVDWHSLNKSPLQYLTCESTSTSWKHNLLVFARNLMDGSLQNDYP 1970


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 84  KGVTNQEKMSGRPATSPSCPNAIRSPE 164
           K +++   +  RP+T PSCPNA  SP+
Sbjct: 291 KVLSHCSPIDARPST-PSCPNASISPK 316


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 509 TSL*SSAPLLIPRTRDLHTAMVRKRTATSSVGSSL 405
           T L SS P+L+PR R   T  V K+   +  GS+L
Sbjct: 433 TVLPSSTPILLPRGRS-STLSVNKKQFNADDGSTL 466


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 411 FITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGT 289
           F+ ++E N +    H+ K+N+Y  + S    N   RV+ GT
Sbjct: 735 FLRVYEKNTLSEIAHH-KFNEYEMVESIILMNDDKRVVVGT 774


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 21/76 (27%), Positives = 28/76 (36%)
 Frame = -1

Query: 574 YFPYNFRLIMAGNSLSSFTETTPRSEARPHS*SRERETCIRRW*GKEQRPHQLEVHYLVG 395
           YF YN  +    +S SS     PR +    S S   +T I         P Q    ++  
Sbjct: 229 YFQYNSSMTAPSSSSSSVAPFVPRRQFSVSSASDPPQTPISMSPPIPPTPSQFSA-FMYQ 287

Query: 394 EQQSVLQDPQH*VQPV 347
            QQS L    H   P+
Sbjct: 288 NQQSYLSPQSHYENPL 303


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 380 YTLLFSHKVMNFQLMRSLFFSLPSPYASLSFAGSRVGPSFRARCSF 517
           Y+L+FSH +++         SL S +    +  S VG SF A  SF
Sbjct: 652 YSLIFSHSLLDLTFQYVDIASLLSQFLLCVYDPSNVGHSF-ALASF 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,827
Number of Sequences: 5004
Number of extensions: 43783
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)