Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20083
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    30   1.2  
12_01_0060 - 499291-501228                                             30   1.6  
01_02_0027 - 10331614-10331737,10332435-10332526,10332977-103330...    30   1.6  
08_01_0105 + 756998-757225,757311-758597                               29   2.1  
06_01_1082 - 8847795-8848033,8848511-8848724                           29   2.8  
08_02_0383 - 16539472-16539633,16543044-16543205                       27   8.6  

>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +2

Query: 26   KSDHLFHYS*A*SVASDCLERCNEPGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 199
            K   L H+S   ++A + L     PGE +R T    + S CHT  + V   T  + IV
Sbjct: 1355 KEHTLVHHSEKLAIAFNLL--ITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIV 1410


>12_01_0060 - 499291-501228
          Length = 645

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 26  KSDHLFHYS*A*SVASDCLERCNEPGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 199
           K   L H+S   ++A + L     PGE +R T    + S CHT  + +   T  + IV
Sbjct: 570 KEHTLVHHSEKLAIAFNLL--VTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIV 625


>01_02_0027 -
           10331614-10331737,10332435-10332526,10332977-10333055,
           10333110-10333408,10335310-10335588
          Length = 290

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 520 TETTPRSEARPHS*SRERETCIRRW*G 440
           TE   R   R HS  RER+ C+R+W G
Sbjct: 17  TEMIDRRWQRLHSGERERKLCVRKWMG 43


>08_01_0105 + 756998-757225,757311-758597
          Length = 504

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -1

Query: 295 RHQHRRHHQGAVVP----QPTKYENDVLF-FIYNREYNDALKLGRIVDASGDRMAFGHD 134
           R+  R HH+GA +P     P +   D  F ++++ E N  + +G +V     R AF  D
Sbjct: 417 RYPRRAHHRGASMPSVRAHPGRISCDAGFGYLHSGEPNPNVLVGAVVGGPDSRDAFADD 475


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 247 TKYENDVLFFIYNREYNDALKLG 179
           T Y  DVL F YN+EY+D   +G
Sbjct: 64  TFYAGDVLVFKYNKEYHDVAVVG 86


>08_02_0383 - 16539472-16539633,16543044-16543205
          Length = 107

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = -2

Query: 369 HNTKYNQYLKLSS-------TTDCNTQDRVIFGTNTADTTREQW 259
           H+  YN+Y+K +S       T DCN  DRV    +   + R+ W
Sbjct: 26  HHKMYNRYVKRTSKFMAHDETEDCNIGDRVKLDPSRPLSKRKHW 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,354,840
Number of Sequences: 37544
Number of extensions: 278194
Number of successful extensions: 890
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)