Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20083
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)                   28   5.0  
SB_52304| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     28   5.0  
SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1)                     28   6.6  
SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               27   8.7  

>SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)
          Length = 1130

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -2

Query: 414 KFITLWENNRVYFKIHNTKYNQYLKLSSTTDC--NTQDRVIFGTNTA-DTTREQWFPS 250
           K+  +W   +V  K+ N+K N    L  T+ C    +D V  G + A D  R+  FP+
Sbjct: 539 KYRDVWRAAQVESKVWNSKENLGASLMRTSTCVRRCEDSVFGGASDAIDLVRKYGFPT 596


>SB_52304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +2

Query: 164 SVHNPTELQSIVVLAIVDEEQDVVFVLRG---LGNHC 265
           SV    E+ S VV+ +  ++QDVV+ L+G   +GN C
Sbjct: 551 SVLKTDEVLSSVVVRLAHQQQDVVWALKGGILIGNAC 587


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 38   LFHYS*A*SVASDCLERCNEPGEDVRETSYFTIVSKCHTVSRSVHNPTEL 187
            LFH S   ++ SD L   +E GED+ E + F ++ KC  +    + PT +
Sbjct: 1325 LFHPSF--NIVSDAL---HENGEDIDEHNSFEVLKKCRYLRMPRYQPTPM 1369


>SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1)
          Length = 397

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 68  ASDCLERCNEPGEDVRETSYFTIVSKCHTVSRSV 169
           AS+ L RCN P +DV +    +   +C T+  +V
Sbjct: 71  ASEKLSRCNMPYDDVSDPEDISSAFQCFTLEENV 104


>SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 93  TNQEKMSGRPATSPSCPNAIRSPEASTILPSFKASLYSRL*MKNRTS 233
           +N+  MS RP+++ S P+  +  ++S +     AS  SRL M  R S
Sbjct: 111 SNRPSMSHRPSSTLSEPDPAKQRKSSDVSHRLSASPNSRLPMIRRVS 157


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 83  ERCNEPGEDVRETSYFTIVSKCHTVSRSVHNPTE 184
           E CNEP +    T+   + SK  T S+  H PTE
Sbjct: 10  ENCNEPKQTSGSTTNVDVNSKSETASKP-HIPTE 42


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 358 VQPVLETKFDD*LQHSRPCYIRHQHRRHHQGAVVPQPTKYEND 230
           ++P +  + DD ++H R    R ++ +H Q A +P+ T  EN+
Sbjct: 502 IEPEINREHDDSIKHGREHLSRDRNDKHKQKA-LPKETLTENN 543


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,490
Number of Sequences: 59808
Number of extensions: 332125
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)