Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20083
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    28   4.4  
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    28   4.4  
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    28   4.4  
Z78539-8|CAE17715.1|  223|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z69661-7|CAE17832.1|  223|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
           protein F35A5.2 protein.
          Length = 111

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 262 VVPQPTKYENDVLFFIYNREYND 194
           V+ +  KY N    F YNREYND
Sbjct: 23  VIKKNRKYNNPPFCFAYNREYND 45


>U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical
           protein ZK1248.9 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 441 EKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQ 262
           EKN D    K     + N + +   +T Y   + L S  DCN     +F  N ADT  ++
Sbjct: 115 EKNPDFFKMK-----DGNHIVYDGQSTLYTT-INLFSELDCNQTKSKVFQINGADTGNDE 168


>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
 Frame = -2

Query: 477 PANERLAYGDGKEKNSDLI--SWKFITLW----ENNRVYFKIHNTKYN-QYLKLSSTTDC 319
           PA + +   D K    DL+  S  ++ LW    +NN     + NT    +Y    ++ D 
Sbjct: 204 PATKIMWIPDQKGTFPDLLATSGDYLRLWRIGTDNNACIESLLNTNRTAEYCAPLTSFDW 263

Query: 318 NTQDRVIFGTNTADTTREQW 259
           N  D  + GT++ DTT   W
Sbjct: 264 NELDMNLIGTSSIDTTCTVW 283


>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform a
           protein.
          Length = 4488

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 430 RPHQLEVHYLVGEQQSVLQDPQH*VQPVLET-KFDD*LQHSRPCYIRHQHRRHHQGAVVP 254
           RPHQ +  +   +QQS  Q+  H  Q + E  +    L   +  Y +HQH++H Q    P
Sbjct: 157 RPHQQQQQHYQQQQQSPRQEVTH--QNLYEQHRRQQQLIREQQLY-QHQHQQHQQQQQQP 213

Query: 253 Q 251
           Q
Sbjct: 214 Q 214


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform d
           protein.
          Length = 4369

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 430 RPHQLEVHYLVGEQQSVLQDPQH*VQPVLET-KFDD*LQHSRPCYIRHQHRRHHQGAVVP 254
           RPHQ +  +   +QQS  Q+  H  Q + E  +    L   +  Y +HQH++H Q    P
Sbjct: 157 RPHQQQQQHYQQQQQSPRQEVTH--QNLYEQHRRQQQLIREQQLY-QHQHQQHQQQQQQP 213

Query: 253 Q 251
           Q
Sbjct: 214 Q 214


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform c
           protein.
          Length = 4447

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 430 RPHQLEVHYLVGEQQSVLQDPQH*VQPVLET-KFDD*LQHSRPCYIRHQHRRHHQGAVVP 254
           RPHQ +  +   +QQS  Q+  H  Q + E  +    L   +  Y +HQH++H Q    P
Sbjct: 157 RPHQQQQQHYQQQQQSPRQEVTH--QNLYEQHRRQQQLIREQQLY-QHQHQQHQQQQQQP 213

Query: 253 Q 251
           Q
Sbjct: 214 Q 214


>Z78539-8|CAE17715.1|  223|Caenorhabditis elegans Hypothetical
           protein F48F7.8 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +2

Query: 239 VLRGLGNHCSLVVSAVLVPNITRS*VLQSVVELSFKYWLYLVLWILKYT-LLFSHKVMNF 415
           +L G   + +L +  +     +++ +L    E  F  WL+ + + L    +L S     F
Sbjct: 99  LLSGFTEYFNLWLHRIFYSLASQNILLSGFAEY-FTLWLHRIFYSLASPYILLSGFTEYF 157

Query: 416 QL-MRSLFFSLPSPYASLS 469
            L +R +F+SL SPY  LS
Sbjct: 158 TLWLRRIFYSLASPYILLS 176


>Z69661-7|CAE17832.1|  223|Caenorhabditis elegans Hypothetical
           protein F48F7.8 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +2

Query: 239 VLRGLGNHCSLVVSAVLVPNITRS*VLQSVVELSFKYWLYLVLWILKYT-LLFSHKVMNF 415
           +L G   + +L +  +     +++ +L    E  F  WL+ + + L    +L S     F
Sbjct: 99  LLSGFTEYFNLWLHRIFYSLASQNILLSGFAEY-FTLWLHRIFYSLASPYILLSGFTEYF 157

Query: 416 QL-MRSLFFSLPSPYASLS 469
            L +R +F+SL SPY  LS
Sbjct: 158 TLWLRRIFYSLASPYILLS 176


>Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical
           protein T23F11.5 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +2

Query: 287 LVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRSLFFSLPSPYASL 466
           L  NI+    +    + S+   L L+ +I++ TLL  + ++NF ++R   FS  + +   
Sbjct: 7   LSSNISYDDPISFECDTSYDSGLELLKYIIQVTLLSINFILNFLIIRVTMFSKNNDFREN 66

Query: 467 SF 472
           SF
Sbjct: 67  SF 68


>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 184 LGRIVDASGDRMAFGHDGEVAGLPD 110
           LGR+ D  GD +  G DGE    PD
Sbjct: 223 LGRLHDLHGDSITVGADGEKVDRPD 247


>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 319 QHSRPCYIRHQHRRHHQGAVVPQPTKYEND 230
           Q  +P   +H H  HHQ   V  P K +N+
Sbjct: 4   QEKKPKKHQHHHHHHHQKGSVALPKKSKNN 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,095
Number of Sequences: 27780
Number of extensions: 245902
Number of successful extensions: 764
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)