Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20083
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.24 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = -1

Query: 433 QRPHQLEVHYLVG--EQQSVLQDPQH*VQPVLETKFDD*LQHSRPCYIRHQHRRHHQGAV 260
           Q P Q+ +    G  + Q +LQ  QH + P     F    QHS   Y++ Q ++HHQ + 
Sbjct: 58  QNPSQMMISPASGIHQMQQLLQ--QHILSPTQLQSFMQ--QHS--LYLQQQQQQHHQDSS 111

Query: 259 VPQPTKYENDVLFFIYNREYNDALKLGR 176
               +  E    F       +   +LGR
Sbjct: 112 SEHASNQERFGYFSSLKDHQHQFAELGR 139


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 122 SYFTIVSKCHTVSRSVHNPTELQSIVVLAIVDEEQDVVFV 241
           S  T+V  C     S  + T++ S+++ ++    QD+VF+
Sbjct: 124 SKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFI 163


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
 Frame = -1

Query: 307 PCYIRHQHRRHHQGAVVPQP-TKYEN 233
           P Y  H H  HHQ      P   YEN
Sbjct: 68  PIYQSHHHLHHHQVLYQQSPYLMYEN 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,631
Number of Sequences: 438
Number of extensions: 3631
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)