Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20082
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    25   0.91 
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    25   0.91 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    21   8.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   8.5  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 668 HNVRRLSSVIVFFKLSI*VFTASNLASVALSRRSKVFP 555
           HN   + ++ +FF+L   V+T+S +     SR +++ P
Sbjct: 266 HNALIVRALFLFFQLWATVYTSSQVTREVQSRSNRMTP 303


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 668 HNVRRLSSVIVFFKLSI*VFTASNLASVALSRRSKVFP 555
           HN   + ++ +FF+L   V+T+S +     SR +++ P
Sbjct: 262 HNALIVRALFLFFQLWATVYTSSQVTREVQSRSNRMTP 299


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/36 (19%), Positives = 18/36 (50%)
 Frame = +3

Query: 168 QTECREVTIEDIRDVLMTLVHLVRATEDKWRDMSSE 275
           +T C + T +  +     + HL +  +D W+ + ++
Sbjct: 71  KTSCAKCTDKQKQGAKTVIQHLYKNKQDWWKQLEAK 106


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 484 SNDDSHRESKENKNTEVDSKLESYGNTLERRLN 582
           SND+S     E   T   SKL+   + +E +L+
Sbjct: 100 SNDNSWESLIEVTKTSETSKLQQLVDNIEHKLS 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,009
Number of Sequences: 336
Number of extensions: 3106
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)