Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20082
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 33 0.062
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.33
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 0.57
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 29 0.57
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 29 0.76
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 29 0.76
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 27 2.3
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 2.3
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 3.1
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 27 3.1
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.1
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 4.0
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 4.0
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 4.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 4.0
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 5.4
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 26 5.4
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 26 5.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 5.4
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 7.1
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 7.1
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.4
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 9.4
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 25 9.4
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 9.4
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.4
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 32.7 bits (71), Expect = 0.062
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Frame = +2
Query: 278 KMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETIL------LQKE--EREKGS 433
K G+ +KKM K+ ++LE LKG + + ET+L +KE ER++
Sbjct: 20 KTNGDFIKKMNTTDSKRLKLLEDLKGKLEVECKIRDGAETLLQVFDTNFKKETKERKEML 79
Query: 434 QKKTDEALESIQKSILALTTTV 499
+KK + LES +K I L +++
Sbjct: 80 KKKCTDELESSKKKIEELVSSI 101
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.33
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Frame = +2
Query: 245 RRQMERHEFREKMLGEQVKKMLMALDKKHRMLEPLK----GMISRLDQRLSNVETILLQ- 409
R ME E R +M +V+++ ++ E LK I +L+ +SN +++LQ
Sbjct: 90 REFMENLEHRYEMTVSEVRRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQK 149
Query: 410 KEEREKGSQK--KTDEALESIQKS 475
K+E EK Q+ + +E + S++ +
Sbjct: 150 KDELEKSIQRCSELEEKINSLESA 173
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.5 bits (63), Expect = 0.57
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 472 IYTSSNDDSHRESKENKNTEVD-SKLESYGNTLERRLNATDARLEAVKTQIDNLKNTITE 648
I +S N D E +++K+ + LES LE LN +L ++ KNTI E
Sbjct: 723 IISSKNRDLLSELEKSKSLNNSLAALESKNKKLENDLNLLTEKLNKKNADTESFKNTIRE 782
Query: 649 DNL 657
L
Sbjct: 783 AEL 785
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.57
Identities = 24/101 (23%), Positives = 52/101 (51%)
Frame = +2
Query: 230 FGASNRRQMERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQ 409
FGA + +E + R + + E+ ++ + DK HR+L +G + +++L ++ + +
Sbjct: 120 FGAL--KHLEAKKRRIESMDEEKRRKIEESDKWHRVLLQAEGKKLKDNEQL--LKKSIRR 175
Query: 410 KEEREKGSQKKTDEALESIQKSILALTTTVTENPRKIKIQK 532
KE+ +K S E ++ +K++L EN +K + K
Sbjct: 176 KEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESK 216
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.76
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 353 GMISRLDQRLSNVETILLQKEEREKGSQKKTD 448
G I +D + ++E L ++EER+KG KK++
Sbjct: 110 GSIEHVDHQNISLEASLAEEEERKKGDAKKSE 141
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 320 DKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSQKKTDEALE 460
+KK L+ +I ++ + +N+E+ LL +E+ + S+KK E E
Sbjct: 102 EKKINELQTFTNIIDQILGQTNNIESTLLSMKEKFESSEKKLSEFSE 148
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 460 KYPEIYTSSNDDSHRESKENKNTEVDSKLESYGNTLERRLNATDARLEAV 609
+YP +YT + H +EN+ E+ + +++ L++R + + +LEA+
Sbjct: 53 RYPILYTPLSTSDHDNDEENEINELKNAVKA----LDKRFDNFELKLEAL 98
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Frame = +2
Query: 266 EFREKMLGEQVK-KMLMALDKKHRMLEPLKGMISRLDQRL----SNVETILLQK-EEREK 427
+ R K+ E+V + L KKH+ML L+ + +QRL S +E ++ + +RE+
Sbjct: 283 DIRSKLESERVVLEQSDLLHKKHQMLIQLENDLQFREQRLSARESELENVIASRLAQREE 342
Query: 428 GSQKKTDEALESIQKSILALTTTVTENPRKIKI 526
+++ ++ L + TV + +K+++
Sbjct: 343 ILRRELEKQLRDMDARYQRHMQTVVNSMQKMRV 375
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 425 KGSQKKT---DEALESIQKSILALTTTVTENPRK 517
KG++KKT D +LES+ + L ++ V+ NP K
Sbjct: 260 KGTKKKTVTFDPSLESVPQKRLNASSNVSSNPAK 293
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +2
Query: 317 LDKKHRMLEPLKGMISRLDQRLSNVETILLQKEE-REKGSQKK----TDEALESIQKSIL 481
+DK+H + E L + LD++L ++ +L E+ R + Q+K T E LE+ ++ +
Sbjct: 13 IDKEHSIREKLTAEVDLLDEKLRVLQLLLANCEQSRNENLQEKEHGLTLEDLENQEEILE 72
Query: 482 AL 487
AL
Sbjct: 73 AL 74
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 380 LSNVETILLQKEEREKGSQKKTDEALESIQKSILALTTTVTENPRKIKIQ 529
++ +E ILL+ E+ E ES QK +L LT +TE +K Q
Sbjct: 19 ITQIEKILLKMEDNTYEYVDVFLEKYESQQKLLLKLTKAITEYLSNLKPQ 68
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 562 TLERRLNATDARLEAVKTQIDNLKN 636
TLERR++ T+ LE+ Q+ + KN
Sbjct: 789 TLERRISETEKELESYAGQLQDAKN 813
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 466 PEIYTSSNDDSHRESKENKNTEVDSKLESY-GNTLERRLNATDARLEAVKTQIDNLKNTI 642
PEIY S +E + + +L S+ G + + + D + + QIDN N +
Sbjct: 181 PEIYGKSITIERTIRREGSS---EYRLRSFNGTVISTKRDELDNICDHMGLQIDNPMNIL 237
Query: 643 TEDNLR 660
T+D R
Sbjct: 238 TQDTAR 243
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 592 ARLEAVKTQIDNLKNTITEDNLRTL 666
AR +KT+ID L+ +ITE N + +
Sbjct: 816 ARARTIKTRIDQLETSITEFNKKLM 840
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = +2
Query: 260 RHEFREKMLGEQVKKML-MALDKKHRMLEPLKGMIS-----RLDQRLSNVETIL-LQKEE 418
R F EK ++KML + + HR + + D + SN E ++ + KEE
Sbjct: 5 RKRFNEKGRQSGIQKMLNLKRARLHRSVREQESSSEVHANPEPDNQDSNAEILIDVPKEE 64
Query: 419 REKGSQKKTDEALESIQKSI 478
R+K Q+ D+ L+ + SI
Sbjct: 65 RQKRKQELKDQLLKENEGSI 84
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 514 ENKNTEVDSKLESYGNTLERRLNATDARLEAVKTQIDNLKNTITED 651
E+ E+D ++ + N E +LN D+ + + I+ L N + E+
Sbjct: 1515 ESTIQELDHEITASKNNYEGKLNDKDSIIRDLSENIEQLNNLLAEE 1560
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/78 (19%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 245 RRQMERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRL-SNVETILLQKEER 421
+++M+ K++ ++ K + +KK+ M+E + I+ + + L S + +I ++ E+
Sbjct: 362 KQRMDNIREEYKVITQERNKKIQETEKKNAMIEMTEQKIAGMREELESQISSITMEFEKL 421
Query: 422 EKGSQKKTDEALESIQKS 475
+ + E L +++ S
Sbjct: 422 KSHVELYIAELLRNLRSS 439
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 239 SNRRQMERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEE 418
S ++ E + E++L + +K +A ++L + I L+ +L ++ LLQ EE
Sbjct: 66 SLKQTAESSQHAEEILSREKEKFRIA-----KLLNITENEIMSLESQLQKMKEQLLQLEE 120
Query: 419 REKGSQ 436
RE S+
Sbjct: 121 RENTSE 126
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -3
Query: 234 PNELRSSAHPGYPRL*LPGILFEESTIEARRRPTIV*FRSACRPFNSKL 88
P E+ S P+ P IL + S A P I S +PFNSKL
Sbjct: 525 PLEVNRSISIPPPKSISPSILHKPSLESASSTPKISSCSSTPKPFNSKL 573
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 511 KENKNTEVDSKLESYGNTLERRLNATDARLEAVKTQ 618
+ K+ DSK + GN+ R A+ A AVKT+
Sbjct: 422 RSKKSLRNDSKSDDVGNSTHRFSTASAASTSAVKTE 457
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 436 KEDR*STGKYPEIYTSSNDDSHRESKENKNTEVDSK---LESYGNTLERRLNATD 591
K+D S E +S+ KENK+TE S N+ +R+L ATD
Sbjct: 38 KQDEQSNPNVREAIANSDGQESLAVKENKDTESSSSHFVPNGVSNSKKRKLVATD 92
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 550 SYGNTLER--RLNATDA-RLEAVKTQIDNLKNTITED 651
SY TLE+ +L D + E VKTQ +N NT+ D
Sbjct: 205 SYKRTLEQNTKLGLVDTDQPEDVKTQTNNASNTLKHD 241
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 678 HSLTQCSKVILSYCVFQVIY 619
H T C ++ LSYC+ Q+ +
Sbjct: 447 HIFTACVEIYLSYCITQLYF 466
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 484 SNDDSHRESKENKNTEVDSKLESYGNTLERRLNATDARLEAVKTQIDNLKNTI 642
++ DS R + + T+ S +TL+ RLN T RLE Q+ KNT+
Sbjct: 175 ASQDSSRPGRYSYRTKSASPALIDTSTLDSRLNFTMGRLERSIAQLS--KNTM 225
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 338 LEPLKGMISRLDQRL-SNVETILLQKEEREKGSQKKTDEALESIQK 472
+EP +S LD+ + VE ++L++ ++ QK+ D L++ K
Sbjct: 108 IEPENSKLSDLDEETRATVEKMMLEQSQKRTDEQKRKD-VLQNFMK 152
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 514 ENKNTEVDSKLESYGNTLERRLNATDARLEAVKTQ-IDNLKNTIT 645
E K+ +VD S LE+RLN + R+ ++TQ ID +N T
Sbjct: 721 ELKSKKVDPGRSSM-EQLEKRLNKLNERINVMRTQMIDKDENKTT 764
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 490 DDSHRESKENKNTEVDSKLESYGNTLERRLNATDARLEAVKTQIDNLKNTITED 651
DDS + K+N N + S + + + + T R E++ +I +L + +T+D
Sbjct: 127 DDSSPKLKQNSNNISKKQNSSRNDDTKVKKDTTIERPESLVVEIVDLPSEVTKD 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,775
Number of Sequences: 5004
Number of extensions: 54268
Number of successful extensions: 225
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -