Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20082
         (788 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   0.50 
AJ416109-1|CAC94781.1|  234|Anopheles gambiae PROSAg25 protein p...    25   3.5  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   4.7  
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    24   6.2  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 317 LDKKHRMLEPLKGMISRLDQRLSNVETILLQKE-EREKGSQKKTDEALESIQKSILALTT 493
           ++K       LK     L+  L+N++  L Q   ++ K   ++ ++ +E++QK+I+    
Sbjct: 703 IEKTAHRFGQLKEQHDMLNYELNNLKQRLAQTSFQQTKEEIEELNKKIETLQKTIVEARE 762

Query: 494 TVTENPRKIK 523
           T T+   K+K
Sbjct: 763 TQTQCSAKVK 772


>AJ416109-1|CAC94781.1|  234|Anopheles gambiae PROSAg25 protein
           protein.
          Length = 234

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/49 (22%), Positives = 19/49 (38%)
 Frame = -3

Query: 432 EPFSRSSFCRRIVSTFESL*SSLDIIPFSGSNILCFLSSAISIFFTCSP 286
           EP   S   +++ +  +    S  + PF  S ++C         F C P
Sbjct: 103 EPIPTSQLVQKVATVMQEYTQSGGVRPFGVSLLICGWDDGRPYLFQCDP 151


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 538 SKLESYGNTLERRLNATDARLEAVKTQIDNLKNTITEDNLRTL 666
           S++E + +  ER L    A LEA+ +  + L+N + ++ +  L
Sbjct: 747 SRIERFRSPKERSLAQCKANLEAMTSTKEGLENELHQELMSQL 789


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 784 HHSCSKYLYSTNFSSYLFNSFSAS 713
           H+S ++Y Y  N+S+Y  ++F  +
Sbjct: 135 HYSHNQYYYMQNYSNYSQHNFQTA 158


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,335
Number of Sequences: 2352
Number of extensions: 12391
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)