Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20081X
(311 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D55F1F Cluster: PREDICTED: similar to CG33113-PF... 63 1e-09
UniRef50_Q9VMV9 Cluster: CG33113-PF, isoform F; n=11; Endopteryg... 55 4e-07
UniRef50_Q29L12 Cluster: GA17292-PA; n=1; Drosophila pseudoobscu... 50 1e-05
UniRef50_Q17NG9 Cluster: Reticulon/nogo; n=2; Endopterygota|Rep:... 46 1e-04
UniRef50_UPI0000EB300C Cluster: reticulon 1; n=1; Canis lupus fa... 44 5e-04
UniRef50_Q4T187 Cluster: Chromosome undetermined SCAF10698, whol... 44 7e-04
UniRef50_Q4G5X5 Cluster: Reticulon 1-A1; n=3; Tetraodontidae|Rep... 44 7e-04
UniRef50_Q4G5W2 Cluster: Reticulon 4-l; n=3; Danio rerio|Rep: Re... 44 7e-04
UniRef50_Q16799 Cluster: Reticulon-1; n=53; Euteleostomi|Rep: Re... 44 7e-04
UniRef50_Q4G5W7 Cluster: Reticulon 1-a1; n=3; Danio rerio|Rep: R... 44 9e-04
UniRef50_Q4G5V7 Cluster: Reticulon 5-a1; n=12; Danio rerio|Rep: ... 44 9e-04
UniRef50_Q4FZ68 Cluster: RTN4-L; n=6; Euteleostei|Rep: RTN4-L - ... 41 0.005
UniRef50_O95197 Cluster: Reticulon-3; n=77; Euteleostomi|Rep: Re... 41 0.005
UniRef50_Q9ES97 Cluster: Reticulon-3; n=7; Murinae|Rep: Reticulo... 41 0.006
UniRef50_Q4S2Q0 Cluster: Chromosome 17 SCAF14760, whole genome s... 40 0.008
UniRef50_UPI0000E822BE Cluster: PREDICTED: similar to RTN3w; n=1... 40 0.014
UniRef50_Q7L7Q6 Cluster: RTN4; n=42; Tetrapoda|Rep: RTN4 - Homo ... 40 0.014
UniRef50_Q9NQC3 Cluster: Reticulon-4; n=72; Euteleostomi|Rep: Re... 40 0.014
UniRef50_Q6JRV1 Cluster: RTN4.1-A2; n=11; Xenopus|Rep: RTN4.1-A2... 38 0.033
UniRef50_UPI0000E4A8E3 Cluster: PREDICTED: similar to reticulon ... 36 0.23
UniRef50_Q7RTJ4 Cluster: RTN-B2; n=11; Ciona intestinalis|Rep: R... 33 0.94
UniRef50_Q4G5V0 Cluster: Reticulon 6-a1; n=22; Danio rerio|Rep: ... 32 2.9
>UniRef50_UPI0000D55F1F Cluster: PREDICTED: similar to CG33113-PF,
isoform F; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG33113-PF, isoform F - Tribolium castaneum
Length = 479
Score = 63.3 bits (147), Expect = 1e-09
Identities = 34/84 (40%), Positives = 42/84 (50%)
Frame = +3
Query: 3 EAEVIFCQMGLVESLIYWXNRHALARPXXXXXXXXXXXXXXXXXXXSPTCRCWRSAPTVA 182
+AE IFC+MGLVESLIYW + T++
Sbjct: 277 DAEAIFCKMGLVESLIYWRDPKKSGPVFGGVLLVLLALTYFSLISVVAYLSLLGLTGTIS 336
Query: 183 FRLYKNVLQAVQKTNDXHPFKWLL 254
FR+YKN++QAVQKT D HPFK LL
Sbjct: 337 FRIYKNIVQAVQKTGDGHPFKDLL 360
>UniRef50_Q9VMV9 Cluster: CG33113-PF, isoform F; n=11;
Endopterygota|Rep: CG33113-PF, isoform F - Drosophila
melanogaster (Fruit fly)
Length = 595
Score = 54.8 bits (126), Expect = 4e-07
Identities = 32/79 (40%), Positives = 37/79 (46%)
Frame = +3
Query: 9 EVIFCQMGLVESLIYWXNRHALARPXXXXXXXXXXXXXXXXXXXSPTCRCWRSAPTVAFR 188
E IFC+ GLVESLIYW + TVAFR
Sbjct: 390 EEIFCKYGLVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFR 449
Query: 189 LYKNVLQAVQKTNDXHPFK 245
+YK+V QAVQKTN+ HPFK
Sbjct: 450 IYKSVTQAVQKTNEGHPFK 468
>UniRef50_Q29L12 Cluster: GA17292-PA; n=1; Drosophila
pseudoobscura|Rep: GA17292-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 547
Score = 50.0 bits (114), Expect = 1e-05
Identities = 31/79 (39%), Positives = 36/79 (45%)
Frame = +3
Query: 9 EVIFCQMGLVESLIYWXNRHALARPXXXXXXXXXXXXXXXXXXXSPTCRCWRSAPTVAFR 188
E IF + GLVESLIYW + TVAFR
Sbjct: 342 EEIFYKYGLVESLIYWRDVKKSGIVFGAGLITLVAISSFSVISVFAYLSLLALFGTVAFR 401
Query: 189 LYKNVLQAVQKTNDXHPFK 245
+YK+V QAVQKT+D HPFK
Sbjct: 402 IYKSVTQAVQKTSDGHPFK 420
>UniRef50_Q17NG9 Cluster: Reticulon/nogo; n=2; Endopterygota|Rep:
Reticulon/nogo - Aedes aegypti (Yellowfever mosquito)
Length = 493
Score = 46.4 bits (105), Expect = 1e-04
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
TV+FR+YKNVLQAVQKT++ HPFK
Sbjct: 348 TVSFRIYKNVLQAVQKTSEGHPFK 371
>UniRef50_UPI0000EB300C Cluster: reticulon 1; n=1; Canis lupus
familiaris|Rep: reticulon 1 - Canis familiaris
Length = 689
Score = 44.4 bits (100), Expect = 5e-04
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFKWLL 254
T++FR+YK+VLQAVQKT++ HPFK L
Sbjct: 548 TISFRIYKSVLQAVQKTDEGHPFKTYL 574
>UniRef50_Q4T187 Cluster: Chromosome undetermined SCAF10698, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF10698,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 214
Score = 44.0 bits (99), Expect = 7e-04
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +3
Query: 147 TCRCWRSAPTVAFRLYKNVLQAVQKTNDXHPFKWLL 254
TC C T+ FR+YK+V+QAVQK++D HPF+ LL
Sbjct: 66 TCLC----VTITFRVYKSVIQAVQKSDDGHPFRSLL 97
>UniRef50_Q4G5X5 Cluster: Reticulon 1-A1; n=3; Tetraodontidae|Rep:
Reticulon 1-A1 - Fugu rubripes (Japanese pufferfish)
(Takifugu rubripes)
Length = 729
Score = 44.0 bits (99), Expect = 7e-04
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK+VLQAVQKT++ HPFK
Sbjct: 588 TISFRIYKSVLQAVQKTDEGHPFK 611
>UniRef50_Q4G5W2 Cluster: Reticulon 4-l; n=3; Danio rerio|Rep:
Reticulon 4-l - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 322
Score = 44.0 bits (99), Expect = 7e-04
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFKWLL 254
TV+FR+YK +LQAVQK+ D HPFK L
Sbjct: 181 TVSFRIYKGILQAVQKSEDGHPFKMYL 207
>UniRef50_Q16799 Cluster: Reticulon-1; n=53; Euteleostomi|Rep:
Reticulon-1 - Homo sapiens (Human)
Length = 776
Score = 44.0 bits (99), Expect = 7e-04
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK+VLQAVQKT++ HPFK
Sbjct: 635 TISFRIYKSVLQAVQKTDEGHPFK 658
>UniRef50_Q4G5W7 Cluster: Reticulon 1-a1; n=3; Danio rerio|Rep:
Reticulon 1-a1 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 767
Score = 43.6 bits (98), Expect = 9e-04
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK+VLQAVQKT++ HPFK
Sbjct: 626 TISFRVYKSVLQAVQKTDEGHPFK 649
>UniRef50_Q4G5V7 Cluster: Reticulon 5-a1; n=12; Danio rerio|Rep:
Reticulon 5-a1 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 818
Score = 43.6 bits (98), Expect = 9e-04
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK+VLQAVQKT++ HPFK
Sbjct: 678 TISFRVYKSVLQAVQKTDEGHPFK 701
>UniRef50_Q4FZ68 Cluster: RTN4-L; n=6; Euteleostei|Rep: RTN4-L -
Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
Length = 383
Score = 41.1 bits (92), Expect = 0.005
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFKWLL 254
T+ FR+YK +LQA+QK+++ HPFK L
Sbjct: 241 TICFRIYKGILQAIQKSDEGHPFKLYL 267
>UniRef50_O95197 Cluster: Reticulon-3; n=77; Euteleostomi|Rep:
Reticulon-3 - Homo sapiens (Human)
Length = 1032
Score = 41.1 bits (92), Expect = 0.005
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK+V+QAVQK+ + HPFK
Sbjct: 890 TISFRIYKSVIQAVQKSEEGHPFK 913
>UniRef50_Q9ES97 Cluster: Reticulon-3; n=7; Murinae|Rep: Reticulon-3
- Mus musculus (Mouse)
Length = 964
Score = 40.7 bits (91), Expect = 0.006
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK+V+QAVQK+ + HPFK
Sbjct: 822 TISFRVYKSVIQAVQKSEEGHPFK 845
>UniRef50_Q4S2Q0 Cluster: Chromosome 17 SCAF14760, whole genome
shotgun sequence; n=2; Tetraodon nigroviridis|Rep:
Chromosome 17 SCAF14760, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 991
Score = 40.3 bits (90), Expect = 0.008
Identities = 14/27 (51%), Positives = 23/27 (85%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFKWLL 254
T++FR+YK +LQA+QK+++ HPF+ L
Sbjct: 850 TISFRIYKGILQAIQKSDEGHPFRQYL 876
>UniRef50_UPI0000E822BE Cluster: PREDICTED: similar to RTN3w; n=1;
Gallus gallus|Rep: PREDICTED: similar to RTN3w - Gallus
gallus
Length = 115
Score = 39.5 bits (88), Expect = 0.014
Identities = 14/24 (58%), Positives = 22/24 (91%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK+V+QAVQK+ + HPF+
Sbjct: 92 TISFRVYKSVIQAVQKSEEGHPFR 115
>UniRef50_Q7L7Q6 Cluster: RTN4; n=42; Tetrapoda|Rep: RTN4 - Homo
sapiens (Human)
Length = 373
Score = 39.5 bits (88), Expect = 0.014
Identities = 13/24 (54%), Positives = 22/24 (91%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK V+QA+QK+++ HPF+
Sbjct: 232 TISFRIYKGVIQAIQKSDEGHPFR 255
>UniRef50_Q9NQC3 Cluster: Reticulon-4; n=72; Euteleostomi|Rep:
Reticulon-4 - Homo sapiens (Human)
Length = 1192
Score = 39.5 bits (88), Expect = 0.014
Identities = 13/24 (54%), Positives = 22/24 (91%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK V+QA+QK+++ HPF+
Sbjct: 1051 TISFRIYKGVIQAIQKSDEGHPFR 1074
>UniRef50_Q6JRV1 Cluster: RTN4.1-A2; n=11; Xenopus|Rep: RTN4.1-A2 -
Xenopus laevis (African clawed frog)
Length = 1055
Score = 38.3 bits (85), Expect = 0.033
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFKWLL 254
T++ R+YK +LQA+QK+ + HPF+ +L
Sbjct: 914 TISLRIYKGILQAIQKSEEGHPFRSIL 940
>UniRef50_UPI0000E4A8E3 Cluster: PREDICTED: similar to reticulon 4
isoform B2; n=3; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to reticulon 4 isoform B2 -
Strongylocentrotus purpuratus
Length = 943
Score = 35.5 bits (78), Expect = 0.23
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFK 245
T++FR+YK VL AVQK+++ PFK
Sbjct: 802 TISFRVYKTVLAAVQKSDEGSPFK 825
>UniRef50_Q7RTJ4 Cluster: RTN-B2; n=11; Ciona intestinalis|Rep:
RTN-B2 - Ciona intestinalis (Transparent sea squirt)
Length = 377
Score = 33.5 bits (73), Expect = 0.94
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFKWLL 254
TVAFRLYK VLQ + T +PF+ LL
Sbjct: 236 TVAFRLYKLVLQTLNGTQQPNPFQSLL 262
>UniRef50_Q4G5V0 Cluster: Reticulon 6-a1; n=22; Danio rerio|Rep:
Reticulon 6-a1 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 875
Score = 31.9 bits (69), Expect = 2.9
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 174 TVAFRLYKNVLQAVQKTNDXHPFKWLL 254
T++ R++ VLQA++KT D HPF+ L
Sbjct: 734 TLSTRVFTAVLQAMRKTEDGHPFRQYL 760
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,417,270
Number of Sequences: 1657284
Number of extensions: 1204123
Number of successful extensions: 2684
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2684
length of database: 575,637,011
effective HSP length: 80
effective length of database: 443,054,291
effective search space used: 10190248693
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -