Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20081X
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78066-8|CAE48546.1|  204|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z78066-5|CAB01523.1|  222|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    27   2.8  

>Z78066-8|CAE48546.1|  204|Caenorhabditis elegans Hypothetical
           protein W06A7.3e protein.
          Length = 204

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 183 FRLYKNVLQAVQKTNDXHPFKWLL 254
           FR++K V   ++KT+  HPF  +L
Sbjct: 58  FRVFKKVEAQIKKTDSEHPFSEIL 81


>Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical
           protein W06A7.3d protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 183 FRLYKNVLQAVQKTNDXHPFKWLL 254
           FR++K V   ++KT+  HPF  +L
Sbjct: 424 FRVFKKVEAQIKKTDSEHPFSEIL 447


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 183  FRLYKNVLQAVQKTNDXHPFKWLL 254
            FR++K V   ++KT+  HPF  +L
Sbjct: 2338 FRVFKKVEAQIKKTDSEHPFSEIL 2361


>Z78066-5|CAB01523.1|  222|Caenorhabditis elegans Hypothetical
           protein W06A7.3b protein.
          Length = 222

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 183 FRLYKNVLQAVQKTNDXHPFKWLL 254
           FR++K V   ++KT+  HPF  +L
Sbjct: 76  FRVFKKVEAQIKKTDSEHPFSEIL 99


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 183  FRLYKNVLQAVQKTNDXHPFKWLL 254
            FR++K V   ++KT+  HPF  +L
Sbjct: 2461 FRVFKKVEAQIKKTDSEHPFSEIL 2484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,355
Number of Sequences: 27780
Number of extensions: 26771
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)