Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20080
         (737 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7JQT9 Cluster: LD47550p; n=2; Sophophora|Rep: LD47550p...    36   1.0  
UniRef50_A7FQV9 Cluster: MATE efflux family protein; n=8; Clostr...    36   1.4  
UniRef50_Q4DNJ1 Cluster: Putative uncharacterized protein; n=2; ...    35   1.8  
UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n...    35   2.4  
UniRef50_Q580G4 Cluster: Ubiquitin-protein ligase, putative; n=1...    34   3.2  
UniRef50_Q7Q1V5 Cluster: ENSANGP00000020999; n=3; Endopterygota|...    34   4.2  
UniRef50_Q2GWG6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_Q07955 Cluster: Splicing factor, arginine/serine-rich 1...    33   7.3  

>UniRef50_Q7JQT9 Cluster: LD47550p; n=2; Sophophora|Rep: LD47550p -
           Drosophila melanogaster (Fruit fly)
          Length = 787

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = -3

Query: 276 SGTRVGVLRGLFS*HTSRIWSVRFRQAPSGNILLKTTADCSL 151
           S T  GVLRG    HT  +WSVRF  +P   I+L +++DC+L
Sbjct: 509 SNTLQGVLRG----HTRGVWSVRF--SPVDQIVLTSSSDCTL 544


>UniRef50_A7FQV9 Cluster: MATE efflux family protein; n=8;
           Clostridium botulinum|Rep: MATE efflux family protein -
           Clostridium botulinum (strain ATCC 19397 / Type A)
          Length = 442

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 15/38 (39%), Positives = 28/38 (73%)
 Frame = -3

Query: 351 DVIFTQTFFRTILNHLIHQAVQQTLSGTRVGVLRGLFS 238
           D++F++  FRTIL++ +  AVQQ+LS   + +++GL +
Sbjct: 225 DIVFSRKLFRTILSYSVLTAVQQSLSSFGMLMIQGLIN 262


>UniRef50_Q4DNJ1 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 790

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = -2

Query: 325 PDNSQSSDTSGSAADPVRDTCWCITRPI---LVAHIQDMVSQIPPSSIR*YSTQDDSRLF 155
           PD+ QS+DT        R      ++     + AH QD++S  PPSS    + ++ S L 
Sbjct: 180 PDSKQSADTQNHLLPQNRHYDTGNSKAFQSQIQAHKQDVISLSPPSSAG--TRRNSSVLL 237

Query: 154 SGRQRLRKTQLRINATPLVTQSRFSQVRCAELSLHQCQIKYE 29
             R   R+    +   P+++QS   + R  E+ + +  +K E
Sbjct: 238 HDRHDNRRNTATLADVPIISQSCTPESRYMEIVIEKIAVKNE 279


>UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: TPR Domain containing
            protein - Tetrahymena thermophila SB210
          Length = 3418

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = -1

Query: 383  LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSRSTHPGYGQSDS 204
            +NP +D+     S L R+   + S + Y++QC    P H L     Y            +
Sbjct: 1278 INPTNDECQYYLSDLMRIIGKKDSQVHYLKQCLTLNPTHELALQRKYELQ-----NSCQN 1332

Query: 203  AKLHQVIFYSRRQQTVLWE-AETPEN 129
             +L Q IFY    Q   WE  E  EN
Sbjct: 1333 EQLAQTIFYEELDQHNNWEYVEQEEN 1358


>UniRef50_Q580G4 Cluster: Ubiquitin-protein ligase, putative; n=1;
            Trypanosoma brucei|Rep: Ubiquitin-protein ligase,
            putative - Trypanosoma brucei
          Length = 4304

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = -2

Query: 334  DFLPDNSQSSDTSGSAADPVRDTC-WCITRPI---LVAHIQDMVSQIPPSSIR*YSTQDD 167
            + +P+ SQ + T+ + +  VR  C +C+TR I   L   ++   + IP   IR +S Q+ 
Sbjct: 4117 ELIPNGSQVAVTNANKSQYVRLRCEFCMTRQIEEQLQEFLKGFYAVIPRKEIRNFSAQEL 4176

Query: 166  SRLFSGRQRLRKTQLRINAT 107
              +  G   +    LR+N T
Sbjct: 4177 ELVICGMPDIDVEDLRLNTT 4196


>UniRef50_Q7Q1V5 Cluster: ENSANGP00000020999; n=3;
           Endopterygota|Rep: ENSANGP00000020999 - Anopheles
           gambiae str. PEST
          Length = 772

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -3

Query: 249 GLFS*HTSRIWSVRFRQAPSGNILLKTTADCSL 151
           G+F  HT  IW+VRF  +P   ILL   ADC++
Sbjct: 494 GVFRGHTRGIWAVRF--SPVDQILLTNAADCTI 524


>UniRef50_Q2GWG6 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 470

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 320 VRKKVCVKMTSVHPCRHFLDSITCSHKVCTKIWRSIYLLKF 442
           V  + CV  T +HP      S +C H+ C    RS++   F
Sbjct: 190 VVSRTCVACTEIHPVTRLAKSPSCGHEYCQDCLRSLFTSSF 230


>UniRef50_Q07955 Cluster: Splicing factor, arginine/serine-rich 1;
           n=43; Deuterostomia|Rep: Splicing factor,
           arginine/serine-rich 1 - Homo sapiens (Human)
          Length = 248

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 146 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 238
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,561,135
Number of Sequences: 1657284
Number of extensions: 17620129
Number of successful extensions: 43553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43535
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)