Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20080
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    28   1.6  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   2.1  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   3.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   3.7  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    27   3.7  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   4.9  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   4.9  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   6.4  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    26   6.4  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    25   8.5  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   8.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.5  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 583 FSCAYRGPCV*IWSIDEKPHSSNVL 509
           F C  +GPC+ I+ + E  H S+++
Sbjct: 30  FLCCAQGPCLRIYDVSESRHESDLI 54


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 400 SMYEDLEEHLPVEIRPEWFLRNYFKSKCCQVPPLVNRARC*NVAFRLYS 546
           +MY+ +   L   ++ E   RNY +++C  +  L  +    NV F +Y+
Sbjct: 188 TMYDHIVVKLVTGLKYEQAKRNYVENECIHILKLTEKYSSQNVPFDVYA 236


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 574 RMRSNCINYPSLLPQRQLLNRIP*TLYVCRKYKLL 678
           ++ S+ ++Y SL+P+R ++  +P   Y    YK++
Sbjct: 187 KLPSHVLSYHSLIPRRMIVTVLPVLRYATSIYKVI 221


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = +1

Query: 298  MYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRN 465
            +++++ N P +S    ++C  +S L   N+    S+   L   +  E   +  +RN
Sbjct: 1164 LFELLPNVPNDSAALGELCDVISKLPPENFALLDSLLHHLRRIIAFEKVNKMNIRN 1219


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 296 RQCSRPCPGHVLVYYEAYSRSTHPGYGQS 210
           R    PC  H L Y + YS+   PGY  S
Sbjct: 397 RNPGSPCISHYLFYSKKYSQFYTPGYSFS 425


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 506 TEHVARMWLFVYTPNLHAWPAV 571
           T   A  W +V  PN H WP V
Sbjct: 434 TSSPAPFWKYVAVPNPHDWPQV 455


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 280 GLLHCLMYQMIENCPEESLRKDDVCSPV--SSLSGFNYMFSQSMYEDLEEH 426
           G+ HC M    E     S+ K +V + V  SSL  F+     S+Y D+++H
Sbjct: 785 GITHCSMND--EGYTTISIPKANVLNSVYNSSLKNFSSSNDTSVYHDVQDH 833


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 591 HKLPVAVATTSTPKSDSINVVRLPEVQTPDVDITNLDPL 707
           HKLPV  +T S  KSD         V   D+  T+ DPL
Sbjct: 241 HKLPVIASTGSACKSDP------TRVNIADISATSEDPL 273


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 513 TLLECGFSSILQIYTHGPRYAHEKQLHKLPVAVATTSTP---KSDSINVVRLPEVQTP 677
           ++L  G+S ++ I+T     +  K LHKL      +  P    +  + ++   E QTP
Sbjct: 571 SILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTP 628


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 35  FNLALVQAEFGTPYLRKSRLCHQWSCINTKLGFP-----ESLPPREQSAVVLSRILPDGA 199
           +NLA++   FG P++    +   +S I+T L        E  PP E + +    I+ D  
Sbjct: 250 YNLAILAKHFGKPFI----VAAPFSSIDTSLASGSQITIEQRPPIEMTTIT-GPIITDSN 304

Query: 200 WRNLTD 217
            RNL D
Sbjct: 305 SRNLED 310


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 300 HQAVQQTLSGTRVGVLRGLFS*HTSRIWSVRFRQAPSGNILLKTTADCSL 151
           HQ  Q  L  T  G L  + S HTS + SV F  +P G+ LL    D  +
Sbjct: 164 HQTGQLFLISTETGRLFHVLSGHTSPVRSVAF--SP-GSTLLAAAGDSKM 210


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 71  PYLRKSRLCHQWSCINTKLGFPESLPPR 154
           P  R S +C     +NTK  F E LPPR
Sbjct: 2   PLGRSSWICCAKYFVNTKSRFNEILPPR 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,060
Number of Sequences: 5004
Number of extensions: 75681
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)