Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20080
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0750 - 6754126-6755248,6755331-6755791 31 0.72
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 30 2.2
06_03_1286 - 29000688-29001526,29001982-29002075,29002480-290025... 29 2.9
02_04_0076 - 19486360-19488723 29 2.9
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 29 5.1
11_06_0754 - 26935647-26937780,26940890-26941827 28 6.7
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 28 6.7
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981... 28 6.7
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 28 8.9
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 28 8.9
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090 28 8.9
>12_01_0750 - 6754126-6755248,6755331-6755791
Length = 527
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +2
Query: 116 NTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHILDVCYENRPRNTPTRVPDRVCCTA 295
N+ LG P P +A V I+P+ W N + L+V + NR R D TA
Sbjct: 127 NSGLG-PVIPPAAAGNATVDGDIIPNTGWYNTDQYALEVIFHNRMRRYECLTSDMAAATA 185
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 576 HEKQLHKLPVAVATTSTPKSDSINVVRLPEVQTPDVDITNLD 701
HEKQLH L A+ T +D IN V P + P + D
Sbjct: 739 HEKQLHALANALLERETLTADEINKVVHPYQEEPQLSFQEED 780
>06_03_1286 -
29000688-29001526,29001982-29002075,29002480-29002581,
29002638-29002710,29003747-29003804,29003859-29003904,
29003985-29004111,29004198-29004273,29004348-29004405,
29004490-29004588,29004679-29004807,29005333-29005454,
29005567-29005735,29005829-29005929,29006082-29006208,
29006284-29006373,29006516-29006602,29006703-29006963,
29007029-29007058
Length = 895
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = -2
Query: 457 KTIQDEFQQVNAPPNLRTYFVRTCN*IQKVTTRVNRRHLYADFLPDNSQSSDTSGSAADP 278
K +Q F V+A P F+R N ++ ++ +N R +Y D + ++S+ P
Sbjct: 398 KEVQ-RFNPVDAFPGDAIIFMRVLNLLRGLSASLNVRIVYLDIMRPFAESTLLGSMTRGP 456
Query: 277 VRDTCWCITRPI 242
++ W P+
Sbjct: 457 TANSQWIYDSPV 468
>02_04_0076 - 19486360-19488723
Length = 787
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 353 QTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSRSTHPGYGQSDSAKLHQVIFYS 174
+T L + +F+ + C G V+ E +S S GYG SDS + FY
Sbjct: 472 RTMQLEHVQPNEFTYTSVLTACM--ALGDVVSGMEIHSNSIRNGYGTSDSVLRSLISFYL 529
Query: 173 RRQQ 162
R Q
Sbjct: 530 REGQ 533
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 513 TLLECGF-SSILQIYTHGPRYAHEKQLHKLPVAVATTSTPKSDS 641
+LL+ GF +Y GP H +++ ++ V V +TP S
Sbjct: 85 SLLDQGFLERAAAVYGEGPHITHPREVRRIDVEVKDNNTPAGSS 128
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 68 TPYLRKSRLCHQWSCINTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHI 223
T L KSR QW +N LG+ P + + ++L D ++ NL++H+
Sbjct: 416 TSILEKSRKMEQWGYVNKSLGYNLMKNPTLEG---IKQVL-DLSYNNLSEHL 463
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 640 ESDLGVDVVATATGSLCSCFSCAYRGP 560
++D GVDV A GSLC S +RGP
Sbjct: 46 DTDAGVDVDARLVGSLCRVLS-DFRGP 71
>07_03_1570 +
27797315-27797409,27797519-27797551,27798135-27798199,
27798406-27798493,27798579-27798651,27798975-27799081,
27799595-27799637,27799760-27799816,27799905-27799981,
27800221-27800266,27800364-27800410,27800498-27800571,
27800656-27800711,27800885-27801011,27801133-27801206
Length = 353
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 234 HTSRIWSVRFRQAPSGNILLKTTADCSLGGRD--SGKPNFVLMQLH 103
H +VRF + SGN++L +ADCS+ D +GKP L H
Sbjct: 50 HKESCRAVRFVE--SGNVILTGSADCSILASDVETGKPIARLEDAH 93
>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 325 EESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEH---LPVEIRPE 450
E+S + DD+C +S++ G + + S ED EH L +EI E
Sbjct: 1097 EKSNQGDDLCKNLSTVKGESPLASNFHVEDAAEHGSMLQIEINAE 1141
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 185 LPDGAWR-NLTDHILDVCYE 241
L DG WR N+TD L +CYE
Sbjct: 622 LEDGHWRRNITDPRLTICYE 641
>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
Length = 625
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 573 AHEKQLHKLPVAVATTSTPKSDSINV--VRLP 662
A+++ LHK AT STPK D ++ VR P
Sbjct: 473 ANDEVLHKYVTPTATPSTPKEDRFHIQGVRTP 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,417,058
Number of Sequences: 37544
Number of extensions: 503734
Number of successful extensions: 1359
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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