Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20080
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          28   6.9  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   9.1  
SB_29931| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)                 28   9.1  

>SB_25061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 736 WMNSDMSQQSRGSRFVISTSGVCTSGRR 653
           + + +MS    G+RF    SGVCTS  R
Sbjct: 162 YFDKNMSMSVHGARFAARHSGVCTSSGR 189


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 391 TCN*IQKVTTRVNRRHLYADFLPDNS--QSSDTSGSAADPVRDTCWCITRPILVAHIQDM 218
           TCN      T +N   +  D+ P+N+   ++ T+    + V+  C  + +P  + +I  M
Sbjct: 589 TCNVSSSCGTTLNTSFIIVDYKPENTTLSANTTNACVGEMVQLNCSAVGKPAEITYILKM 648


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -2

Query: 331  FLPDNSQSSDTSGSAADPVRDTCWCIT-RPILVAHIQDMVSQIP 203
            F P+       +    DP +  CWC+T R I V   + M  + P
Sbjct: 1867 FFPECKADGSFTSLQCDPAKRVCWCVTSRGIEVPGTRGMPGERP 1910


>SB_29931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = +2

Query: 32  IFNLALVQAEFGTPYLRKSRLCHQ------WSCINTKLGFPESLPPREQSAVVLSRILPD 193
           + NL L+  +F T    ++ L HQ      W  +        S+P RE    + + I P 
Sbjct: 70  LLNLGLLSTDFPTNPHTRAALIHQRVPKDTWKTVTDAWNGYHSVPLREADRHLTTFITPF 129

Query: 194 GAWR 205
           G WR
Sbjct: 130 GRWR 133


>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
          Length = 1219

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 609 VATTSTPKSDSINVVRLPEVQTPDVDITNLDP 704
           V  T   + D I + R+P  +T D+DI + DP
Sbjct: 646 VTVTHVSEPDCIYIQRVPPPETDDMDIYDADP 677


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,121,747
Number of Sequences: 59808
Number of extensions: 599519
Number of successful extensions: 3665
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3659
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)