Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20080
(737 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M72709-2|AAA35565.1| 248|Homo sapiens protein ( Human alternati... 33 1.1
M72709-1|AAA35564.1| 292|Homo sapiens protein ( Human alternati... 33 1.1
M69040-1|AAA03476.1| 248|Homo sapiens SF2p33 protein. 33 1.1
BC033785-1|AAH33785.1| 201|Homo sapiens SFRS1 protein protein. 33 1.1
BC010264-1|AAH10264.1| 248|Homo sapiens splicing factor, argini... 33 1.1
AB209558-1|BAD92795.1| 233|Homo sapiens splicing factor, argini... 33 1.1
AB062124-1|BAB93456.1| 248|Homo sapiens OK/SW-cl.3 protein. 33 1.1
U87279-1|AAD00626.1| 221|Homo sapiens splicing factor SRp30c pr... 30 7.5
U30825-1|AAA93069.1| 221|Homo sapiens SRp30c protein. 30 7.5
BX571740-1|CAE11866.1| 603|Homo sapiens hypothetical protein pr... 30 7.5
BC093973-1|AAH93973.1| 221|Homo sapiens splicing factor, argini... 30 7.5
BC093971-1|AAH93971.1| 221|Homo sapiens splicing factor, argini... 30 7.5
BC039089-1|AAH39089.1| 612|Homo sapiens RPGRIP1 protein protein. 30 7.5
AL021546-5|CAA16498.1| 221|Homo sapiens splicing factor, argini... 30 7.5
AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protei... 30 7.5
AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protei... 30 7.5
AF265667-1|AAG10001.1| 645|Homo sapiens RPGR-interacting protei... 30 7.5
AF265666-1|AAG10000.1| 669|Homo sapiens RPGR-interacting protei... 30 7.5
AF260257-1|AAF91371.1| 902|Homo sapiens RPGR-interacting protei... 30 7.5
AF227257-1|AAG10246.1| 762|Homo sapiens RPGR-interacting protei... 30 7.5
>M72709-2|AAA35565.1| 248|Homo sapiens protein ( Human alternative
splicing factor mRNA, complete cds. ).
Length = 248
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 238
PP R ++ VV+S + P G+W++L DH+ DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
>M72709-1|AAA35564.1| 292|Homo sapiens protein ( Human alternative
splicing factor mRNA, complete cds. ).
Length = 292
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 238
PP R ++ VV+S + P G+W++L DH+ DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
>M69040-1|AAA03476.1| 248|Homo sapiens SF2p33 protein.
Length = 248
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 238
PP R ++ VV+S + P G+W++L DH+ DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
>BC033785-1|AAH33785.1| 201|Homo sapiens SFRS1 protein protein.
Length = 201
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 238
PP R ++ VV+S + P G+W++L DH+ DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
>BC010264-1|AAH10264.1| 248|Homo sapiens splicing factor,
arginine/serine-rich 1 (splicing factor 2, alternate
splicing protein.
Length = 248
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 238
PP R ++ VV+S + P G+W++L DH+ DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
>AB209558-1|BAD92795.1| 233|Homo sapiens splicing factor,
arginine/serine-rich 1 (splicing factor 2, alternate
splicing protein.
Length = 233
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 238
PP R ++ VV+S + P G+W++L DH+ DVCY
Sbjct: 146 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 181
>AB062124-1|BAB93456.1| 248|Homo sapiens OK/SW-cl.3 protein.
Length = 248
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 238
PP R ++ VV+S + P G+W++L DH+ DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
>U87279-1|AAD00626.1| 221|Homo sapiens splicing factor SRp30c
protein.
Length = 221
Score = 30.3 bits (65), Expect = 7.5
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 238
PP +S V++S + P G+W++L DH+ DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139
>U30825-1|AAA93069.1| 221|Homo sapiens SRp30c protein.
Length = 221
Score = 30.3 bits (65), Expect = 7.5
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 238
PP +S V++S + P G+W++L DH+ DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139
>BX571740-1|CAE11866.1| 603|Homo sapiens hypothetical protein
protein.
Length = 603
Score = 30.3 bits (65), Expect = 7.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -1
Query: 416 KSSYILCENM*LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSR 237
K YI E+ L PE+ G+ T ++SS + + Q P V + Y
Sbjct: 243 KFPYIPPESF-LKPEAQTKGKDTKDSSKISSEEEKAS-FPSQDQMASP-EVPIEAGQYRS 299
Query: 236 STHPGYGQSDSAKLHQVIFYSRRQ 165
P +G K HQV+ YSRR+
Sbjct: 300 KRKPPHGGERKEKEHQVVSYSRRK 323
>BC093973-1|AAH93973.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 9 protein.
Length = 221
Score = 30.3 bits (65), Expect = 7.5
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 238
PP +S V++S + P G+W++L DH+ DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139
>BC093971-1|AAH93971.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 9 protein.
Length = 221
Score = 30.3 bits (65), Expect = 7.5
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 238
PP +S V++S + P G+W++L DH+ DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139
>BC039089-1|AAH39089.1| 612|Homo sapiens RPGRIP1 protein protein.
Length = 612
Score = 30.3 bits (65), Expect = 7.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -1
Query: 416 KSSYILCENM*LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSR 237
K YI E+ L PE+ G+ T ++SS + + Q P V + Y
Sbjct: 252 KFPYIPPESF-LKPEAQTKGKDTKDSSKISSEEEKAS-FPSQDQMASP-EVPIEAGQYRS 308
Query: 236 STHPGYGQSDSAKLHQVIFYSRRQ 165
P +G K HQV+ YSRR+
Sbjct: 309 KRKPPHGGERKEKEHQVVSYSRRK 332
>AL021546-5|CAA16498.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 9 protein.
Length = 221
Score = 30.3 bits (65), Expect = 7.5
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Frame = +2
Query: 146 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 238
PP +S V++S + P G+W++L DH+ DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139
>AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protein 1
protein.
Length = 1286
Score = 30.3 bits (65), Expect = 7.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -1
Query: 416 KSSYILCENM*LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSR 237
K YI E+ L PE+ G+ T ++SS + + Q P V + Y
Sbjct: 926 KFPYIPPESF-LKPEAQTKGKDTKDSSKISSEEEKAS-FPSQDQMASP-EVPIEAGQYRS 982
Query: 236 STHPGYGQSDSAKLHQVIFYSRRQ 165
P +G K HQV+ YSRR+
Sbjct: 983 KRKPPHGGERKEKEHQVVSYSRRK 1006
>AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protein 1
protein.
Length = 1286
Score = 30.3 bits (65), Expect = 7.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -1
Query: 416 KSSYILCENM*LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSR 237
K YI E+ L PE+ G+ T ++SS + + Q P V + Y
Sbjct: 926 KFPYIPPESF-LKPEAQTKGKDTKDSSKISSEEEKAS-FPSQDQMASP-EVPIEAGQYRS 982
Query: 236 STHPGYGQSDSAKLHQVIFYSRRQ 165
P +G K HQV+ YSRR+
Sbjct: 983 KRKPPHGGERKEKEHQVVSYSRRK 1006
>AF265667-1|AAG10001.1| 645|Homo sapiens RPGR-interacting protein 1
isoform b protein.
Length = 645
Score = 30.3 bits (65), Expect = 7.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -1
Query: 416 KSSYILCENM*LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSR 237
K YI E+ L PE+ G+ T ++SS + + Q P V + Y
Sbjct: 285 KFPYIPPESF-LKPEAQTKGKDTKDSSKISSEEEKAS-FPSQDQMASP-EVPIEAGQYRS 341
Query: 236 STHPGYGQSDSAKLHQVIFYSRRQ 165
P +G K HQV+ YSRR+
Sbjct: 342 KRKPPHGGERKEKEHQVVSYSRRK 365
>AF265666-1|AAG10000.1| 669|Homo sapiens RPGR-interacting protein 1
isoform a protein.
Length = 669
Score = 30.3 bits (65), Expect = 7.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -1
Query: 416 KSSYILCENM*LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSR 237
K YI E+ L PE+ G+ T ++SS + + Q P V + Y
Sbjct: 309 KFPYIPPESF-LKPEAQTKGKDTKDSSKISSEEEKAS-FPSQDQMASP-EVPIEAGQYRS 365
Query: 236 STHPGYGQSDSAKLHQVIFYSRRQ 165
P +G K HQV+ YSRR+
Sbjct: 366 KRKPPHGGERKEKEHQVVSYSRRK 389
>AF260257-1|AAF91371.1| 902|Homo sapiens RPGR-interacting protein
protein.
Length = 902
Score = 30.3 bits (65), Expect = 7.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -1
Query: 416 KSSYILCENM*LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSR 237
K YI E+ L PE+ G+ T ++SS + + Q P V + Y
Sbjct: 542 KFPYIPPESF-LKPEAQTKGKDTKDSSKISSEEEKAS-FPSQDQMASP-EVPIEAGQYRS 598
Query: 236 STHPGYGQSDSAKLHQVIFYSRRQ 165
P +G K HQV+ YSRR+
Sbjct: 599 KRKPPHGGERKEKEHQVVSYSRRK 622
>AF227257-1|AAG10246.1| 762|Homo sapiens RPGR-interacting protein-1
protein.
Length = 762
Score = 30.3 bits (65), Expect = 7.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -1
Query: 416 KSSYILCENM*LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYYEAYSR 237
K YI E+ L PE+ G+ T ++SS + + Q P V + Y
Sbjct: 402 KFPYIPPESF-LKPEAQTKGKDTKDSSKISSEEEKAS-FPSQDQMASP-EVPIEAGQYRS 458
Query: 236 STHPGYGQSDSAKLHQVIFYSRRQ 165
P +G K HQV+ YSRR+
Sbjct: 459 KRKPPHGGERKEKEHQVVSYSRRK 482
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,575,065
Number of Sequences: 237096
Number of extensions: 2818370
Number of successful extensions: 6246
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6237
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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