Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20080
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 31 1.1
U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z69361-3|CAA93289.1| 533|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68882-20|CAA93112.1| 533|Caenorhabditis elegans Hypothetical p... 28 6.0
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 28 6.0
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 28 6.0
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 28 6.0
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF067215-1|AAC17011.1| 495|Caenorhabditis elegans Hypothetical ... 28 7.9
AF003137-8|AAB93645.3| 494|Caenorhabditis elegans Hypothetical ... 28 7.9
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 585 QLHKLPVAVATTSTPKSDSINVVRLPEVQTPDVDITNLDPLDCCD 719
Q LPV+ ++ST S + R+P + PDV LD +C D
Sbjct: 212 QFDTLPVSFRSSSTSSSTG-GLPRIPNIPVPDVPFIPLDDDNCYD 255
>U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical
protein F15A8.7 protein.
Length = 472
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 248 AYSRSTHPGYGQSDSAKLHQVIFYSRRQQTVLWEAETPENP 126
A+S + H + S+ +LH+ IF+ ++ +A+ P NP
Sbjct: 428 AHSATEHGAHNHSEHHQLHRSIFHHGAPTSIRSQAQVPHNP 468
>Z69361-3|CAA93289.1| 533|Caenorhabditis elegans Hypothetical
protein T13H10.1 protein.
Length = 533
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +1
Query: 283 LLHCLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVE 438
++ + Y++ EE + + + +L GF+ + Y +L +H+P+E
Sbjct: 350 IVRFITYRICAGAEEERVTMSEAVRELLTLEGFDQAPGSNSYFELPDHIPME 401
>Z68882-20|CAA93112.1| 533|Caenorhabditis elegans Hypothetical
protein T13H10.1 protein.
Length = 533
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +1
Query: 283 LLHCLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVE 438
++ + Y++ EE + + + +L GF+ + Y +L +H+P+E
Sbjct: 350 IVRFITYRICAGAEEERVTMSEAVRELLTLEGFDQAPGSNSYFELPDHIPME 401
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 167 VVLSRILPDGAWRNLTDHIL---DVCYENRPRN 256
V++ + P G+W++L DH+ DVCY + R+
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD 157
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 328 LPDNSQSSDTSGSAADPVRD 269
LP +SQ+ TSGSAA PV D
Sbjct: 823 LPTSSQTPPTSGSAAPPVDD 842
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 167 VVLSRILPDGAWRNLTDHIL---DVCYENRPRN 256
V++ + P G+W++L DH+ DVCY + R+
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD 157
>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
protein K04D7.5b protein.
Length = 1287
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 580 RSNCINYPSLLPQRQ 624
RSN I YP+LLP RQ
Sbjct: 491 RSNAIRYPALLPSRQ 505
>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
protein K04D7.5a protein.
Length = 1338
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 580 RSNCINYPSLLPQRQ 624
RSN I YP+LLP RQ
Sbjct: 491 RSNAIRYPALLPSRQ 505
>AF067215-1|AAC17011.1| 495|Caenorhabditis elegans Hypothetical
protein ZK380.2 protein.
Length = 495
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = +1
Query: 292 CLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRNYF 471
C+ +Q E+ + L S V SL+ YMFS++ YE L+ ++++P L +Y+
Sbjct: 382 CINHQFSEHIEKLKLEHK---SYVESLNDLKYMFSEAQYELLDS---LDVKPR-ALCDYY 434
Query: 472 KSK 480
+++
Sbjct: 435 RAR 437
>AF003137-8|AAB93645.3| 494|Caenorhabditis elegans Hypothetical
protein C27A12.8 protein.
Length = 494
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 374 LDSITCSHKVCTKIWRSIYLLKFVLN 451
L ++C+H+ CT+ W++ YL + N
Sbjct: 137 LSGLSCNHRACTQCWKA-YLTNKIAN 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,084,016
Number of Sequences: 27780
Number of extensions: 436522
Number of successful extensions: 1145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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