Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20080
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05880.1 68414.m00616 expressed protein                             30   1.4  
At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase, p...    29   4.3  
At4g17120.1 68417.m02578 expressed protein                             29   4.3  
At3g05690.1 68416.m00636 CCAAT-binding transcription factor (CBF...    28   5.6  
At4g22980.1 68417.m03316 expressed protein ; expression supporte...    28   7.4  
At2g41520.2 68415.m05131 DNAJ heat shock N-terminal domain-conta...    28   7.4  
At2g41520.1 68415.m05130 DNAJ heat shock N-terminal domain-conta...    28   7.4  
At5g59270.1 68418.m07427 lectin protein kinase family protein co...    27   9.8  
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica...    27   9.8  

>At1g05880.1 68414.m00616 expressed protein
          Length = 426

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 356 HPCRHFLDSITCSHKVCTKIWRS 424
           HP ++ L S++C H++CT+ W S
Sbjct: 101 HPHKN-LASVSCGHRICTRCWTS 122


>At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 484

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 591 HKLPVAVATTSTPKSDSINVVRLPEVQTPDVDITNLDP 704
           HKL V  A  S  K  S NV+ L   QT DV +T   P
Sbjct: 154 HKLTVVAADASYTKPFSTNVIMLGPGQTTDVLLTADQP 191


>At4g17120.1 68417.m02578 expressed protein
          Length = 1661

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +3

Query: 375  WIQLHVLTKYVRRFGGAFTC*NSS*MVFEKLFQIEVLSGATFSQQSTLLECGFS-SILQI 551
            W+ +HV  K  R+ G  F    +  +V +++ + E+  G T +        G S SI Q 
Sbjct: 961  WLPMHVRKKQTRKVGLPFRSKKNDEVVLDEVTEEEIYEGHTIASTLNFKLLGLSVSISQF 1020

Query: 552  --YTHGP 566
                HGP
Sbjct: 1021 GNQQHGP 1027


>At3g05690.1 68416.m00636 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 295

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/26 (61%), Positives = 16/26 (61%)
 Frame = +3

Query: 489 GATFSQQSTLLECGFSSILQIYTHGP 566
           GATFS QS  LE GFS    IYT  P
Sbjct: 82  GATFSMQSPCLELGFSQ-PPIYTKYP 106


>At4g22980.1 68417.m03316 expressed protein ; expression supported
           by MPSS
          Length = 559

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 116 NTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHILDVCYEN 244
           NTK    ESLP    S   L    PD    N  DH+    Y+N
Sbjct: 49  NTKFTSQESLPRLRTSFYDLITAFPDYLQTNQADHLRSTEYQN 91


>At2g41520.2 68415.m05131 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1077

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 18  SGYFSYLIWHWCKLSSAHLT*ENLD 92
           S Y S ++W W K+S +H    NL+
Sbjct: 771 STYHSLIVWRWNKISKSHFYLGNLE 795


>At2g41520.1 68415.m05130 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1108

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 18  SGYFSYLIWHWCKLSSAHLT*ENLD 92
           S Y S ++W W K+S +H    NL+
Sbjct: 771 STYHSLIVWRWNKISKSHFYLGNLE 795


>At5g59270.1 68418.m07427 lectin protein kinase family protein
           contains Pfam domains PF00139: Legume lectins beta
           domain and PF00069: Protein kinase domain
          Length = 668

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 370 LSGFNYMFSQSMYEDLEEHLPVEIRPE-WFLRNYFKS 477
           L GF Y++ +  Y ++ EH   E  P+ +  RN +K+
Sbjct: 309 LGGFLYLYKKKKYAEVLEHWENEYSPQRYSFRNLYKA 345


>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|O14981
           TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
           sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 2049

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 379 FNYMFSQSMYEDLEEHLPVEIRPEWFLRN 465
           F YM    +YE L   L ++ RPEW +R+
Sbjct: 537 FKYMNPSLIYETLNILLQMQRRPEWEIRH 565


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,920,758
Number of Sequences: 28952
Number of extensions: 402323
Number of successful extensions: 1079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)