Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20079
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    27   2.0  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    26   4.6  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.1  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   6.1  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.1  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   6.1  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.1  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   8.1  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.1  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 121 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 237
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/83 (24%), Positives = 42/83 (50%)
 Frame = +3

Query: 456 VSWKFTPVLENNRVYFKICPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLRPSM 635
           ++W  TP +E ++ YF++   R +     + R V     SS+   PL P   T ++ PS 
Sbjct: 385 LTWSTTPDVETSKEYFEL-GYRFHDGAVYVERGV----CSSSWKYPLYPERCTSSVPPSS 439

Query: 636 YESDVMFFVYNREYNSVMTLWMK 704
           YE + +  +     +S++ ++++
Sbjct: 440 YEDNYILEIEAVVDHSIIEVYLQ 462


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 610 VFEGVSGAITVDDTVIT 560
           V  G+ GAIT+DD++IT
Sbjct: 117 VAAGIEGAITLDDSIIT 133


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = -1

Query: 368 FVYELDSLLGEDHSKLDGEVRFDDFLSILCP*LVGEVHVFLLPFSIRRFTASLITSPFFS 189
           F+ E+D LL   + K + E+    FLS +     GE ++ +  F ++R     + SP   
Sbjct: 16  FLAEIDELLTIPYEKNELEIGVSKFLSFINK--YGEPYL-ITEFQLQRCMEKFLNSPL-- 70

Query: 188 FRYSEHLAIAVSY 150
           ++  E+  +++ Y
Sbjct: 71  YQLDENAVLSIFY 83


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 357 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 449
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +3

Query: 471 TPVLENNRVYFKICPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTL 623
           +P   NN VY    PPR N T +     VL    S        PSN+  TL
Sbjct: 313 SPPKPNNPVYL---PPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATL 360


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 434 QRQNQQESLLEVYPRVGKQQSLLQDMSTEDKQYLKLDNTKGSSDDRI 574
           +RQN Q+ L EV   V + QSL+ + + +  +  +L       ++RI
Sbjct: 148 ERQNHQQQLEEVLATVDQLQSLVTNFNDQQDEVDELRERITLKEERI 194


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -1

Query: 215 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 54
           +LI SP  S   S ++   V  S       M  L+Y+ S + +S+  A + L+  + T  
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343

Query: 53  TKANKVSLI 27
            + N VSLI
Sbjct: 344 FQENVVSLI 352


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 211 KEAVKRLIENGKRNTWTSPTSY 276
           +E+++R+ +    N+W+SP SY
Sbjct: 318 RESLQRIYQKLTSNSWSSPVSY 339


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 486 NNRVYFKICPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLRPSMYE 641
           +NRVY +IC    NS  ++ +R +  +  +  ++  LT  NT       +YE
Sbjct: 187 SNRVYSQICELEANSA-ANRSRLMDFLPANDPLLFNLTEQNTLSYELSGLYE 237


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 407  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 291
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,708
Number of Sequences: 5004
Number of extensions: 62302
Number of successful extensions: 256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)