Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20079
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 0.90
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 30 1.6
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 2.8
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363... 29 3.6
11_06_0722 - 26678873-26680843 28 6.4
05_03_0618 - 16262826-16263097,16263111-16263183 28 6.4
03_02_0950 + 12661008-12662312,12662403-12662576 28 6.4
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 28 6.4
08_01_0692 + 6121443-6122266,6122812-6124798 28 8.4
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282... 28 8.4
04_04_1178 + 31508349-31508461,31510074-31510932 28 8.4
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 28 8.4
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 28 8.4
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 333 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 437
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +2
Query: 380 RPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDMSTEDKQYLKLDNTK 553
RP R +R L+ + QQES +EV R ++++ +++ ++DKQ + + N++
Sbjct: 580 RPPSLRKQSKLDQVVRRLRMKKQQESTIEVQSR-RRRKTRTKNVISKDKQLINIQNSR 636
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 401 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 315
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>05_01_0458 +
3630218-3630274,3630383-3630507,3630635-3630710,
3630884-3630985,3631075-3631290,3632217-3632297,
3633152-3633235,3633405-3633509,3634338-3634516,
3634681-3634765,3634889-3635090,3635165-3635234,
3635353-3635422,3635745-3635834,3636020-3636088,
3636520-3636618,3636804-3636914
Length = 606
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 157 TAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWT 261
T + + E L E K E ++RL ENGK WT
Sbjct: 410 TEVVRLIELLDEAKSRSKSELLQRLTENGKIVDWT 444
>11_06_0722 - 26678873-26680843
Length = 656
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 592 GAITVDDTVITRTFRVIELQVLFVLGGHILK*TLLFSNTGVNFQETFLLV 443
G + D + RTFRVIE+++ FV K L++S+ + +F +V
Sbjct: 240 GGLLHGDRCVERTFRVIEVELAFVHDYFYTKYFLIYSSHHLFVTLSFAMV 289
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 102 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 16
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 106 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 207
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +3
Query: 150 IRDRYRQML*ISEGKEGRGYQGSREASDRKRQ-EEHMDFAYQLWTKDGKEIVKSYFPIQF 326
I+D+YR+M+ G G ++G R RQ ++ + W + G+ V
Sbjct: 166 IKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTVPKMVGQGV 225
Query: 327 RVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDK 443
+ + +RD +AL + + + + ++ KDK
Sbjct: 226 YGVGPVLAALMAERRDFYALYIQEGMDFS-VSNKKKKDK 263
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 404 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 291
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
>05_01_0361 -
2824728-2826043,2826288-2826507,2827616-2827702,
2827726-2827980,2828704-2828733
Length = 635
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +2
Query: 353 QAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDMSTEDKQY 532
Q KQ+ +RP RP+ P+ N + Q+ + V P Q +T+ K +
Sbjct: 241 QKEKQQSSNRPSSRRPSYPKSNASFYGRLHLQKHAYPSVPPEQAMYHMWHQVQATQQKPH 300
Query: 533 LKLDNTKGSS 562
+ T GS+
Sbjct: 301 FPMVPTMGST 310
>04_04_1178 + 31508349-31508461,31510074-31510932
Length = 323
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 437 RQNQQESLLEVYPRVGKQQSLLQDMSTEDKQ 529
+++QQE+L EV R K++S LQD T K+
Sbjct: 23 QESQQETLEEVLSRHRKEKSKLQDKETSLKK 53
>04_04_1113 -
30986757-30986780,30986781-30987273,30987437-30987959,
30988361-30988615,30988812-30988926,30989026-30989078,
30989213-30989265,30989419-30989473,30989549-30989599,
30989776-30990024,30990122-30990350,30990994-30991305
Length = 803
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -1
Query: 224 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 45
F +S+ + F+ +LA ++ MTT I+ C S LG L+ HT+R
Sbjct: 367 FFSSIPSGVFWPVFLIANLAALIASRTMTTAIFQC-LKQSIALGCFPRLKI-IHTSRKFM 424
Query: 44 NKVSLILAQWLSL 6
K+ + + W L
Sbjct: 425 AKIYIPVVNWFLL 437
>01_07_0312 +
42677752-42678561,42678701-42678910,42679597-42679704,
42679915-42680010,42680090-42680182,42680276-42680386,
42680482-42680514,42680592-42680642,42680960-42681037,
42681145-42681165
Length = 536
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 167 AIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANK 39
A+ + S M T+ + C+AS +S + ALE A ++ NK
Sbjct: 465 ALENNCSHMETVFHVCTASVTSEIAEDKALELIAKAVESRMNK 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,523,146
Number of Sequences: 37544
Number of extensions: 410935
Number of successful extensions: 1382
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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