Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20079
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_27215| Best HMM Match : PPR (HMM E-Value=3.2)                       32   0.53 
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 29   4.9  
SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_13749| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          28   8.6  
SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  
SB_45465| Best HMM Match : HEAT (HMM E-Value=0.018)                    28   8.6  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 24/91 (26%), Positives = 45/91 (49%)
 Frame = +2

Query: 332 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDM 511
           DLH  + Q  +Q G     + +  + QQ   + LQ+Q QQ+   ++  +  KQ S+ + +
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQ---QQLQQQQQQKQQQQLQKKQQKQSSMEEKL 614

Query: 512 STEDKQYLKLDNTKGSSDDRIIYGDSTADTF 604
           S+E ++ + L    GSS +  +    + D F
Sbjct: 615 SSEIEK-MTLATGDGSSKEGSLMDPVSVDEF 644


>SB_27215| Best HMM Match : PPR (HMM E-Value=3.2)
          Length = 603

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 628 GLKVPVVFEGVSGAITVDDTVITRTFRVIELQVLFVLGGHILK*TLLFSNTGVNFQETFL 449
           G K  +VF+ VS ++ + ++          + V FVL GH ++  L F  + +NF+E  L
Sbjct: 286 GKKAEMVFDYVSDSLELQESFWRFFVPEHSISVPFVLVGHTVEPALSFDRSHINFREMLL 345


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +3

Query: 363  NKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKICPPRTNST*SS 542
            N  D H  K  D  N+N  +F    +K +  +         NN  + K+C  R+ +T + 
Sbjct: 1456 NNNDTHYNKNTDDNNNN--SFVRYVNKNNNNIHHNKNTDDNNNNSFVKLCQGRSTTTITI 1513

Query: 543  ITRKVLVMTVSSTVIAPLTPSN 608
             T     MT  +T ++    +N
Sbjct: 1514 FTITKTPMTTITTALSRYVNNN 1535


>SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 483 ENNRVYFKICPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLRPSMYESDVMFFV 662
           ENNR      PP  N T +SIT      + +     P   S TTG   PS   +D+   +
Sbjct: 532 ENNRSSLSQPPPSKNQTTASIT----TTSTTGNPTLPQEQSATTGNPTPSPSHNDLRLII 587

Query: 663 Y 665
           +
Sbjct: 588 H 588


>SB_13749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 431 LQRQNQQESLLEVYPRVGKQQSLLQDMSTEDKQYLKLDNTKGSS 562
           ++RQN QES++ V     K++S+L    + D  +  L+ T G S
Sbjct: 81  VKRQNSQESVVNVPSPDPKRRSMLNSQGSNDSSH-SLNRTSGYS 123


>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 500 LQDMSTEDKQYLKLDNTKGSSDDRIIYGD 586
           +++MS E+KQ  K DN KG S+ +   GD
Sbjct: 215 VKEMSLEEKQPQKKDNQKGKSEKKKGKGD 243


>SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +1

Query: 418 LHSVTPKTKPARKSPGSLPPCWKTTEFTS----RYVH--RGQTVP 534
           +HS  P T P R +    PPC   T + S    RY+H  R  TVP
Sbjct: 211 IHSTRPTTVPVRCTLRVQPPCPLCTLYASNHRTRYIHSTRPTTVP 255


>SB_45465| Best HMM Match : HEAT (HMM E-Value=0.018)
          Length = 301

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 85  TLAPRTDDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTW 258
           T  P+ D  + +QL +S ++ EY    +K S     +  + IKE ++ L+EN   N W
Sbjct: 127 TCLPQVDHEIMQQL-VSTIVKEY----SKNSRPHARQVDKYIKEILQDLVENLNSNLW 179


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 424 SVTPKTKPARKSPGSLPPCWKTTEFTSRYVHRGQTVPEAR 543
           S++P +   R S GSL P  +T+  TSR   R ++   AR
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRAR 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,556,315
Number of Sequences: 59808
Number of extensions: 484726
Number of successful extensions: 1624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)