Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20079
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    33   0.20 
AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.47 
Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical pr...    31   0.81 
DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated...    31   0.81 
U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucos...    29   2.5  
U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucos...    29   2.5  
DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide glyc...    29   2.5  
DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide glyc...    29   2.5  
Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AL033508-3|CAA22054.1|  315|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -3

Query: 288  HPLSITGR-RSPCVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQ 112
            HP S   R  + C+P    D T     DN + +  Q FR+ G S +     +  +     
Sbjct: 770  HPCSQPARCDNLCIPANTPDLTTSS--DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTY 827

Query: 111  YVISSWCKCGVRSQRTHGEDEG 46
              ISSW +C  +     GEDEG
Sbjct: 828  KCISSWWRCDGQDDCGDGEDEG 849


>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 124 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 237
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical
           protein C45B11.1a protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 215 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 36
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R     V
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135

Query: 35  S 33
           S
Sbjct: 136 S 136


>DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated
           kinase PAK-2 protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 215 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 36
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R     V
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135

Query: 35  S 33
           S
Sbjct: 136 S 136


>U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform c protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -1

Query: 170 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 18
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform b protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -1

Query: 170 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 18
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -1

Query: 170 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 18
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -1

Query: 170 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 18
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical
           protein C15H7.4 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 82  ATLAPRTDDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGK---RN 252
           AT +P  +  L ++   +V  G  E  +A   +   EKK EV+     + +EN K   RN
Sbjct: 136 ATTSPTIESDLTDKPDTNVYTGSREGYVAPSEKGSNEKKKEVVPNGGDKSVENKKGSDRN 195

Query: 253 TWTSPT 270
              +P+
Sbjct: 196 VKKTPS 201


>AL033508-3|CAA22054.1|  315|Caenorhabditis elegans Hypothetical
           protein Y106G6G.4 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 513 PPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLRPSMYESDV 650
           PP TNS+ S++     V+ ++S+ +  L  +  T TL  S  +S V
Sbjct: 228 PPTTNSSNSTVESVTSVIPINSSTVPVLNTTLQTSTLAESSSQSVV 273


>Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical
           protein F19H8.5 protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 570 VSSTVIAPLTPSNTTGTLRPSMY 638
           + S  IAPL PSN+ G L PS++
Sbjct: 159 ILSPRIAPLMPSNSKGLLSPSIF 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,878
Number of Sequences: 27780
Number of extensions: 350322
Number of successful extensions: 1290
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)