Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20079
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    26   0.31 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    26   0.31 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    26   0.31 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.93 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.7  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 160 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTS 264
           A+A   +   +K+ EVIK+ +K L+EN K   W S
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDS 104


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 160 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTS 264
           A+A   +   +K+ EVIK+ +K L+EN K   W S
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDS 104


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 160 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTS 264
           A+A   +   +K+ EVIK+ +K L+EN K   W S
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDS 104


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 279 TKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIA 422
           T + K+I K   P + ++I     V ++   DH    L+D   +  IA
Sbjct: 124 TMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIA 171


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 EEHMDFAYQLWTKDGKEI 299
           ++H D  +  WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 EEHMDFAYQLWTKDGKEI 299
           ++H D  +  WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 EEHMDFAYQLWTKDGKEI 299
           ++H D  +  WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 EEHMDFAYQLWTKDGKEI 299
           ++H D  +  WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 EEHMDFAYQLWTKDGKEI 299
           ++H D  +  WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 EEHMDFAYQLWTKDGKEI 299
           ++H D  +  WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 EEHMDFAYQLWTKDGKEI 299
           ++H D  +  WT DG ++
Sbjct: 190 DQHCDMKFGSWTYDGNQV 207


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 EEHMDFAYQLWTKDGKEI 299
           ++H D  +  WT DG ++
Sbjct: 190 DQHCDMKFGSWTYDGNQV 207


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 353 QAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQE 454
           Q H+Q+      V    +PQQ   +  Q+Q QQ+
Sbjct: 422 QQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQ 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,723
Number of Sequences: 438
Number of extensions: 4492
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)