Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20079
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08840.1 68414.m00984 DNA replication helicase, putative simi...    31   0.57 
At1g62250.2 68414.m07023 expressed protein                             30   1.3  
At1g62250.1 68414.m07022 expressed protein                             30   1.3  
At2g24690.1 68415.m02948 transcriptional factor B3 family protei...    29   2.3  
At5g51650.1 68418.m06404 hypothetical protein                          29   3.0  
At5g09400.1 68418.m01089 potassium transporter family protein si...    29   3.0  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   3.0  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   4.0  
At2g23190.1 68415.m02770 cytochrome P450, putative Similar to  C...    29   4.0  
At1g56660.1 68414.m06516 expressed protein                             29   4.0  
At1g47310.1 68414.m05238 expressed protein                             27   9.3  

>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
           to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
          Length = 1296

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +3

Query: 432 SKDKTSKKVSWKFTPVLENNRVYFKICPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNT 611
           S+D    +++WK +PV E  R   K  P   + T +S+ ++     ++S V   L+  + 
Sbjct: 117 SQDDCGGEITWKISPVNERLRAAAKNIPKMMDLTENSLGKQCPTSGITSKVEQWLSSPSK 176

Query: 612 TGTLRPSMYESDVM 653
             + RP+   + VM
Sbjct: 177 KASKRPAFATNRVM 190


>At1g62250.2 68414.m07023 expressed protein
          Length = 223

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 38  LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 166
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At1g62250.1 68414.m07022 expressed protein
          Length = 267

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 38  LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 166
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At2g24690.1 68415.m02948 transcriptional factor B3 family protein
           low similarity to reproductive meristem protein 1
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 682

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 432 SKDKTS-KKVSWKFTPVLENNRVYFKICPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 608
           SK+  S K  S   T  +ENNR   +  PPR+  + S+I  + + +T    +++ +    
Sbjct: 289 SKESLSIKPSSGNMTKKVENNREASRKYPPRSRESSSAIQNQFMALTPLRDIVSQVAHDL 348

Query: 609 TTGTLRPSMYESDVMFFV 662
           + G +    ++ D M  V
Sbjct: 349 SIGEVINFRHKGDNMLRV 366


>At5g51650.1 68418.m06404 hypothetical protein 
          Length = 206

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 180 ISEGKEGRGYQGSREASDRKRQEEHMDFAYQLWTKDGKEIVKSYFPI 320
           + E KEG   QG  E  ++   E+  + A+  W KDG   V   + I
Sbjct: 38  VQERKEGLEAQGKEEGVEKVLVEKEKEEAHVSWEKDGSVSVAYTYAI 84


>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = -1

Query: 224 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 45
           F +S+  S F+   +  ++A  ++   MTT  +SC    S+ LG    L+   HT+R   
Sbjct: 411 FFSSVPGSAFWPVLFIANIAALIASRTMTTATFSC-IKQSTALGCFPRLKI-IHTSRKFM 468

Query: 44  NKVSLILAQWLSL 6
            ++ + +  W  L
Sbjct: 469 GQIYIPVLNWFLL 481


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 300 VKSYFPIQFRVIFTEQTVKLINKR-DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP 476
           V S + +QF V  +   +  IN R D HAL ++ + + +K+ F D    +    +  F P
Sbjct: 76  VPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHSSSLVLEAVSFLP 135

Query: 477 VLENNRV 497
             E  R+
Sbjct: 136 KDERPRL 142


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 383 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 291
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At2g23190.1 68415.m02770 cytochrome P450, putative Similar to
           Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
          Length = 543

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 269 VGEVHVFLLPF--SIRRFTASLITSPFFSFRYSEHLAIAVS 153
           +G +H+   P   +   F+ SL  +P FS R   HL + VS
Sbjct: 86  IGHLHLLKQPLHRTFLSFSQSLGDAPIFSLRLGNHLTVVVS 126


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 186 EGKEGRGYQGSREASDRKRQEEHMDFAYQLWTKDGKE 296
           +GK+ +G +G  E  D ++++EH +   ++  KD K+
Sbjct: 213 KGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKK 249


>At1g47310.1 68414.m05238 expressed protein
          Length = 395

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = +3

Query: 339 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKICPP 518
           T QTV  +  +   A  ++  Q   + + G ++   SKKV+W+  P +E  RV+F++   
Sbjct: 286 TRQTVSSVTAK-LKASGMVRFQLEIERSIGKNESVISKKVAWRTKPKIE--RVWFEVTAK 342

Query: 519 RTNST*SSI-TRKVLVMTVSSTVIAPLTPSNTTGTLRPSM 635
                  ++  RKV+      T       SN + T  PS+
Sbjct: 343 IEGDKLKAVRLRKVVPFIEVDTEAWSSLMSNMSFTKFPSL 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,295
Number of Sequences: 28952
Number of extensions: 333525
Number of successful extensions: 1250
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)