Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20078
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    50   3e-07
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    35   0.011
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    30   0.42 
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    29   0.56 
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.74 
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    28   1.7  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   2.2  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.9  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    26   6.9  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.1  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   9.1  

>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 25/68 (36%), Positives = 39/68 (57%)
 Frame = +2

Query: 314 TGFTPNQIERLYSRFTSLDKNDCGTLSREDFLRIPELAINPLSERIVQSFFAESHDDRVN 493
           + F+  +IER+  RF  +D N  G++ R +FL IP +A NPL+ R+  S   E     V+
Sbjct: 16  SSFSNEEIERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPLASRLF-SVVDEDGGGDVD 74

Query: 494 FLQFMGFL 517
           F +F+  L
Sbjct: 75  FQEFINSL 82



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +1

Query: 565 REEKLRFAFSMYDLDSDGKISRDELLAIL 651
           +EEKL+FAF +YD+D DG IS  EL  +L
Sbjct: 91  KEEKLKFAFKIYDIDRDGYISNGELYLVL 119


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +1

Query: 571 EKLRFAFSMYDLDSDGKISRDELLAIL 651
           +KL +AF +YDLD++G IS DE+L I+
Sbjct: 99  DKLIWAFQLYDLDNNGLISYDEMLRIV 125


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 263 KSSLLLREEEIAQIQEETGFTPNQIERLYSRFTSLDKND-CGTLSREDFLRIPELAINPL 439
           +S L  +EE++ +       T N+I R Y   T L KN+   + S E+ +R  +     L
Sbjct: 469 ESQLREKEEDLIRANRLKQDTLNEISRTYQELTFLQKNNPTYSQSMENLIREAQETYQQL 528

Query: 440 SERIV 454
           S+R++
Sbjct: 529 SKRLL 533


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 323 TPNQIERLYSRFTSLDKNDCGTLSREDFLRIPELAINPLSERIVQSFFAESHDDRVNFLQ 502
           T +QI+ L   F  LDK+  G + RED   +        SE  +   F ES +  +N   
Sbjct: 43  TSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMF-ESINPPINLAA 101

Query: 503 FM 508
           F+
Sbjct: 102 FL 103


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 544 RENKLNCREEKLRFAFSMYDLDSDGKISRDELLAIL 651
           +E   N  +++L      +DLD DG+I+  E +AI+
Sbjct: 137 KELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIM 172


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 574 KLRFAFSMYDLDSDGKISRDELLAIL 651
           + R AFS++D D DG I+ +EL  ++
Sbjct: 13  EFREAFSLFDRDQDGNITSNELGVVM 38


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 302 FVQFPPLSTTKTTYFPLSVKSLLTFVPRPLI 210
           F+    L  T  T+F L   ++LT VP PL+
Sbjct: 354 FLDISKLQMTSLTFFLLISTTILTLVPAPLV 384


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 713 GSFSNTRQLFLTNIGSNHPCASIARSSS 630
           G  S+TR+ F +++GS+ P      SSS
Sbjct: 328 GHSSSTRRPFFSDVGSSQPAEEFVGSSS 355


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 393 DNVPQSFLSSDVNRE*RRSI*LGVNPVSSCICAISS 286
           ++    F +S + R+ R S  L + PVS+CIC IS+
Sbjct: 68  EHAKDGFRTSVIVRQ-RASYGLVIVPVSACICLIST 102


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 SQKVGN-KSSLLLREEEIAQIQEETGFTPNQIERLYSRFTSLDK-NDCGTLSREDFL 409
           ++++ N K+S+   +EEI  +QE+     NQ   L  R  + D       LS ED L
Sbjct: 135 AEEISNLKTSITHLDEEIQILQEKLAIVTNQRNTLVKRLQTYDNLEKKKALSMEDRL 191


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 698 TRQLFLTNIGSNHPCASIARSSSLDILPSLSR 603
           ++Q  +T +  N P  S+  SSS D +P+++R
Sbjct: 138 SKQKGITVVFRNDPLESVRVSSSFDSIPAIAR 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,519
Number of Sequences: 5004
Number of extensions: 70566
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)