Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20078
         (770 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein ...    26   1.1  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   2.6  
AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    24   4.5  

>CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein
           protein.
          Length = 227

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 654 TWMVGANISEEQLTSIAERTNHWKQTLNN 740
           +W++G NI+  +L  IA  T+  + T+NN
Sbjct: 157 SWVIGVNITTLELDCIAGTTDLLEITVNN 185


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 520 HFRPIKKNRENKLNCREEKLRFAFSMYDLDSDGK 621
           H+R + ++    +  RE K+  + S+ D+D DGK
Sbjct: 269 HYRAVAQSMSLAVFGRERKVWNSASLIDVDRDGK 302


>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 571 EKLRFAFSMYDLDSDGKISRDEL 639
           EK +F FS+YD +  G++   +L
Sbjct: 11  EKAQFVFSVYDWEGSGQMDAMDL 33


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,317
Number of Sequences: 2352
Number of extensions: 16641
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80249979
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)