Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20078
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.2  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   5.5  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   5.5  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 60  FNFFTVISNGIVIYISC 110
           F F  ++ NG+VI+I C
Sbjct: 58  FTFLALLGNGLVIWIFC 74


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 188 LSAIRAPLSKVLAQRLVVISQKVGNKSSLL 277
           ++ +  P  K +   L VIS+K+GN   LL
Sbjct: 79  MTFVTVPRYKGVPSSLNVISEKIGNGGRLL 108


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 299 QIQEETGFTPNQIERLYSRFTSLDKNDCGTLSREDFLRIPELAINPLSERIVQS 460
           ++QEE  F P++I +L      L KN   TL     L      ++ L+ R+ QS
Sbjct: 265 KMQEEKIFEPHRIPQLQEVSEFLKKNTGFTLRPAAGLLTSRDFLSSLAFRVFQS 318


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 94  YNNNYNNYNKHNYN 107


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 94  YNNNYNNYNKHNYN 107


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 94  YNNNYNNYNKHNYN 107


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 94  YNNNYNNYNKHNYN 107


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 94  YNNNYNNYNKHNYN 107


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 94  YNNNYNNYNKHNYN 107


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 94  YNNNYNNYNKHNYN 107


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 94  YNNNYNNYNKHNYN 107


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 94  YNNNYNNYNKHNYN 107


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 327 YNNNYNNYNKHNYN 340


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  YISCYKNFEKHNYH 140
           Y + Y N+ KHNY+
Sbjct: 327 YNNNYNNYNKHNYN 340


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 526  RPIKKNRENKLNCREEKLRF 585
            RP+K+++EN+ N   ++ R+
Sbjct: 1646 RPMKESQENQQNAETQRERY 1665


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 526  RPIKKNRENKLNCREEKLRF 585
            RP+K+++EN+ N   ++ R+
Sbjct: 1642 RPMKESQENQQNAETQRERY 1661


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 51  IRKFNFFTVISNGIVIYI 104
           I    F +V+ NG+V+YI
Sbjct: 25  IGMLGFVSVMGNGMVVYI 42


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 538 KNRENKLNCREEKLRFAFSMYDLDSDGKISRDE 636
           +N + +  CR   L    S  D D DGK++ +E
Sbjct: 263 ENEDLEELCRGCNLGHMISYDDTDGDGKLNVNE 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,538
Number of Sequences: 438
Number of extensions: 4811
Number of successful extensions: 24
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)