Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20077
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    69   4e-13
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    68   7e-13
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    59   4e-10
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   8.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   8.6  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 32/53 (60%), Positives = 37/53 (69%)
 Frame = +3

Query: 261 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
           EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 62  EYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 55.2 bits (127), Expect = 5e-09
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +2

Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYV 142


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 68.1 bits (159), Expect = 7e-13
 Identities = 31/53 (58%), Positives = 38/53 (71%)
 Frame = +3

Query: 261 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
           EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 61  EYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = +2

Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYV 141


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 58.8 bits (136), Expect = 4e-10
 Identities = 27/57 (47%), Positives = 36/57 (63%)
 Frame = +3

Query: 249 TVVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
           T +  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 56  TFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = +2

Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY+
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYV 140


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 89  SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSSQ 259
           S+G+   ++C L+Q+ C    R  R   +   +    G+ LP +   K   G  S Q
Sbjct: 18  SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQ 74


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 239 LKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPL 90
           LK +   L +E  + + + NL+V+    +L      + T G FL SS P+
Sbjct: 239 LKKAFTKLFSEPTMVNKSINLIVQARQQILSTAYLTALTRGDFLSSSRPI 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,001
Number of Sequences: 5004
Number of extensions: 32971
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)