Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20077
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    60   1e-09
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    60   1e-09
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    35   0.033
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    27   6.5  
11_01_0447 + 3464791-3465358,3465364-3465641                           27   8.7  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = +2

Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 505
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVA 138



 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 26/54 (48%), Positives = 38/54 (70%)
 Frame = +3

Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
           +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK+ K    L
Sbjct: 56  QEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 112 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ 252
           K   VPESVLK             +  L  +  A++ ++ IF RA+Q
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQ 53


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = +2

Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 505
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVA 137



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = +3

Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
           +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK+ K    L
Sbjct: 55  EEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 35.1 bits (77), Expect = 0.033
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 395 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
           +R++L+  RL Q+  GVF++   AT+  L + EP+I
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFI 139


>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 313 IVATTTFPGKPNWHLSSESVVSTKFH 390
           +V    +P   NWHLSS S +  K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598


>11_01_0447 + 3464791-3465358,3465364-3465641
          Length = 281

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 218 RRRGKSSRGLNSSQGIPHQ 274
           R   +S RG N+ QG+PHQ
Sbjct: 157 REAAQSMRGCNAMQGLPHQ 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,686,098
Number of Sequences: 37544
Number of extensions: 214982
Number of successful extensions: 440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)