Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20077
(506 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 73 1e-13
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 3.8
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29) 27 8.9
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29) 27 8.9
SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29) 27 8.9
SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61) 27 8.9
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27) 27 8.9
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09) 27 8.9
SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021) 27 8.9
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23) 27 8.9
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 72.9 bits (171), Expect = 1e-13
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +3
Query: 255 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
VKEYR KE DE+R+ + A+ GN+YVP EA+LAFVIRIRGIN VSPK K L
Sbjct: 55 VKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 505
+VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIA 138
Score = 33.5 bits (73), Expect = 0.10
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 100 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ 252
+D K+P VPE++LK + L ++ K++EIFKRAE+
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEK 53
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 298 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 435
PDK A+ TTT P + ++ T + R P S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 249 TVVKEYRI--KERDEIRLARQARNRGNYYVP 335
++ ++YR K RD +AR+ R+RG YY+P
Sbjct: 473 SISEKYRSSGKIRDTSSIARETRSRGPYYLP 503
>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 622
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHC 504
+WC T E Y TY RA+ C
Sbjct: 370 EWCKATMEASYTMNITYHRAIKC 392
>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHC 504
+WC T E Y TY RA+ C
Sbjct: 841 EWCKATMEASYTMNITYHRAIKC 863
>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 324
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHC 504
+WC T E Y TY RA+ C
Sbjct: 289 EWCKATMEASYTMNITYHRAIKC 311
>SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)
Length = 324
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHC 504
+WC T E Y TY RA+ C
Sbjct: 289 EWCKATMEASYTMNITYHRAIKC 311
>SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61)
Length = 219
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHC 504
+WC T E Y TY RA+ C
Sbjct: 64 EWCKATMEASYTMNITYHRAIKC 86
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHC 504
+WC T E Y TY RA+ C
Sbjct: 1011 EWCKATMEASYTMNITYHRAIKC 1033
>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
Length = 1068
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHC 504
+WC T E Y TY RA+ C
Sbjct: 470 EWCKATMEASYTMNITYHRAIKC 492
>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
Length = 310
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 351 PIWLPRERSSCHDCVLVWLV*FHHVP 274
P+ P E S C CVL WL ++ P
Sbjct: 28 PLMAPCEHSYCSACVLGWLTHYNTCP 53
>SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021)
Length = 205
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHC 504
+WC T E Y TY RA+ C
Sbjct: 64 EWCKATMEASYTMNITYHRAIKC 86
>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
Length = 491
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHC 504
+WC T E Y TY RA+ C
Sbjct: 281 EWCKATMEASYTMNITYHRAIKC 303
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,698,957
Number of Sequences: 59808
Number of extensions: 252773
Number of successful extensions: 515
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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