Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20077
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    62   2e-10
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   1.9  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   1.9  
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical...    27   7.8  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 27/50 (54%), Positives = 39/50 (78%)
 Frame = +3

Query: 255 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 404
           V+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 54  VQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = +2

Query: 398 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 505
           RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+A
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVA 137



 Score = 30.7 bits (66), Expect = 0.63
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 106 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ 252
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEK 52


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 217 KKKREIFKRAEQ*SRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 396
           KK+R++ ++  + SR  ASR  +K     K    A +T P +PN +  S S  S ++  +
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 397 P*SSATV*TAP 429
             S   + + P
Sbjct: 81  RSSQVKIRSVP 91


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 326  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 460
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 326  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 460
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 326  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 460
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 317 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 439
           +Q++R  G Q+GI    PW  P F++V R  L+  R  ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


>AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical
           protein Y39B6A.29 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 197 FSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSF 96
           F  TC+ L  ++ L L  L T  GT+ SF LS F
Sbjct: 238 FKQTCSALTSKSMLQLFPLFTVLGTSSSFWLSIF 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,016,436
Number of Sequences: 27780
Number of extensions: 186262
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)