Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20076
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.37 
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    24   1.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.0  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   4.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.9  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.9  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.9  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   7.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 374 LEINIKTHEKTAEIQNRMIMRLQKQKQEDDKLFIEKKTKL 493
           L+IN+         +NR     Q+QKQ + +  +EK +KL
Sbjct: 104 LKINLPESRVQVWFKNRRAKCRQQQKQHNQQQSVEKSSKL 143


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 303 ASFFKVSTTTVFSLIVNLTSIY 238
           A FF ++ TT+  +I N+T+ +
Sbjct: 316 AGFFSINKTTLLQIIGNVTTFF 337


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 24  TKNEEKTLSLSEKENKLTELVSTINGLKEENNSLKSLNDVITKEK 158
           T N EK+ +  +KE K    + TING+K +   + ++ +    +K
Sbjct: 488 TINLEKS-NFIQKEVKFLGHILTINGIKADPEKISAIRNFPVPQK 531


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 303 ASFFKVSTTTVFSLIVNLTS 244
           A FF +  +T+FS++ +LT+
Sbjct: 221 ARFFSIDRSTLFSVLNSLTT 240


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 550 PLPPHHNLSSELHI 509
           P PP+H LS   H+
Sbjct: 72  PYPPNHPLSGSKHL 85


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 303 ASFFKVSTTTVFSLIVNLTS 244
           A FF ++ T VFS++  +T+
Sbjct: 625 AGFFAINYTLVFSILGGVTT 644


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 297 FFKVSTTTVFSLIVNLTSIYRLS 229
           FF +    +FSLI N+   + +S
Sbjct: 740 FFDIRKNLIFSLIANVAMYFVIS 762


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 303 ASFFKVSTTTVFSLIVNLTS 244
           A FF ++ T VFS++  +T+
Sbjct: 350 AGFFAINYTLVFSILGGVTT 369


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,933
Number of Sequences: 336
Number of extensions: 2374
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)