Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20076
         (743 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    29   0.11 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    29   0.15 
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    29   0.15 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   1.9  
AJ973475-1|CAJ01522.1|  127|Anopheles gambiae hypothetical prote...    24   5.7  
AJ697728-1|CAG26921.1|  127|Anopheles gambiae putative sensory a...    24   5.7  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   10.0 
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   10.0 

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 29.5 bits (63), Expect = 0.11
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = +2

Query: 305 KSLLEQNLALKEQCEEKTRDCSRLEI--NIKTHEKTAEIQ---NRMIMRLQKQKQEDDKL 469
           K   ++  +LK++C EK       ++  N K  ++  E Q    + +  ++K+K+E D++
Sbjct: 213 KQEADRYASLKQECSEKQVHFQLFKLYHNEKEAKRLKEDQISKQQELNIIEKRKEEADEV 272

Query: 470 FIEKKTKLNELTNNM 514
             EKK ++ ++T  M
Sbjct: 273 LKEKKKEVGKMTREM 287



 Score = 25.4 bits (53), Expect = 1.9
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
 Frame = +2

Query: 242 IDVKLTIKENTVVVETLKNEA----KSLLEQNLALKEQCEEKTRDCSRLEINIKT-HEKT 406
           I+ K  I+EN   +E+ KNEA    + L++     +   EE+ R  + L  ++ T  E+ 
Sbjct: 421 INKKAQIEENYKKIESEKNEALKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGTSKERI 480

Query: 407 AEIQNRM-IMRLQKQKQEDDKLFIEKKTKLNELTNNMKL 520
            E+Q+ +  +R Q    + DK    ++ K  E+    KL
Sbjct: 481 HELQSELDNVREQLGDAKIDKHEDARRKKKQEVVELFKL 519


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +2

Query: 272 TVVVETLKNEAKSLLEQN-------LALKEQCEEKTRDCSRLEINIKTHEKTAEIQNRMI 430
           T  + TLK+E K LLE+        + LK   +E     S  E  +K  +     + R +
Sbjct: 449 TANLATLKDETKVLLEEKEKLQTELIELKRAVDESKSALSIAESELKICQHDEVTERRKL 508

Query: 431 MRLQKQKQEDDKLFIEKKTKLNEL 502
             L+   +E +K   EK+ +L  L
Sbjct: 509 ESLRYSYEETEKDLEEKRARLQTL 532



 Score = 24.6 bits (51), Expect = 3.3
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 15  NSDTKNEEKTLSLSEKENKLTELVSTINGLKEENNSLKSLNDVITKEKETQASELERSCE 194
           N  T  +E  + L EKE   TEL+     + E  ++L      +   +  + +E  R  E
Sbjct: 451 NLATLKDETKVLLEEKEKLQTELIELKRAVDESKSALSIAESELKICQHDEVTE-RRKLE 509

Query: 195 VIKQNAFELDK 227
            ++ +  E +K
Sbjct: 510 SLRYSYEETEK 520


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 272 TVVVETLKNEAKSLLEQNLALKEQ----CEEKTRDCSRLEINIKTHEKTAEIQNRMIMRL 439
           T  +E LK   + L EQNL +KEQ     E+ TR C  L+   +  ++  E     + +L
Sbjct: 90  TPELELLKATIQQLEEQNLEMKEQNFRLAEQITRMCQLLQEEKEEAKRREEKLKAQMEKL 149

Query: 440 QKQKQEDDKL 469
               Q D  L
Sbjct: 150 AAAHQRDRNL 159


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +2

Query: 197 NKTKRLRTG--QDESRYIDVKLTIKENTVVVETLKNEAKSLLEQNLALKEQCEEKTRDCS 370
           ++ K+LRT   + E R  + +  + +    ++T + + +S  ++ +ALKE      R   
Sbjct: 333 DELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEAYGTVRRTLQ 392

Query: 371 RLEINIKTHEKTAEIQNRMIMRLQKQKQE 457
            ++      E+     +  + R+QK  ++
Sbjct: 393 DVQAKQAAIERGMRNASERVTRIQKDARQ 421


>AJ973475-1|CAJ01522.1|  127|Anopheles gambiae hypothetical protein
           protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 490 IERTNEQYEALKRDYDAAVKDLESSRE 570
           IE   EQ++AL++ YD     +E  RE
Sbjct: 91  IENRKEQWDALQKKYDPENLYVEKYRE 117


>AJ697728-1|CAG26921.1|  127|Anopheles gambiae putative sensory
           appendage protein SAP-2 protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 490 IERTNEQYEALKRDYDAAVKDLESSRE 570
           IE   EQ++AL++ YD     +E  RE
Sbjct: 91  IENRKEQWDALQKKYDPENLYVEKYRE 117


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +2

Query: 281 VETLKNEAKSLLEQNLALKEQ----CEEKTRDCSRLEINIKTHEKTAEIQNRMIMRLQKQ 448
           +E L+   + L EQN A+KEQ     E+ T  C  L+   +  ++  E     + +L   
Sbjct: 117 LELLRATIQRLEEQNCAMKEQNAKLLEQITGMCQLLQEEKEEAKRREEKLEAQMEKLAAA 176

Query: 449 KQED 460
            Q D
Sbjct: 177 HQRD 180


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
            protein.
          Length = 1253

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
 Frame = +1

Query: 421  QNDYETSKTETGRR*TIHR----EKN*IERTNEQYEALKRDYDAAVKD----LESSREAV 576
            + D E  +   GRR TIHR     KN  + +N +    +  Y     D    L  SR+ +
Sbjct: 1055 EEDLEDEQKAIGRRDTIHRILYQHKNKQDWSNLEANFKRNYYKEGELDLGHRLTLSRKTL 1114

Query: 577  NQL-TTQKDLVEGR 615
            N L T +K + E R
Sbjct: 1115 NVLDTRRKSMAEQR 1128


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,007
Number of Sequences: 2352
Number of extensions: 9589
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76507752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)