Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20075
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1502 + 30616070-30616182,30617524-30617752,30618777-306188... 37 0.015
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 34 0.11
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 34 0.11
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 34 0.11
11_06_0339 - 22488214-22488254,22488339-22488829,22490233-224904... 30 1.7
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 30 1.7
08_02_0854 - 21905054-21906308,21906396-21907300 30 1.7
07_03_0163 + 14588041-14588266,14588835-14589001,14589880-145900... 30 1.7
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990 30 1.7
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624... 30 2.3
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544 29 3.0
12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404 28 7.0
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865... 28 7.0
09_02_0349 - 7632140-7632234,7632348-7632449,7632864-7632962,763... 28 7.0
09_02_0131 - 4693828-4694019,4694107-4694199,4694294-4694375,469... 28 7.0
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 28 7.0
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 28 7.0
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913... 28 7.0
11_01_0772 - 6455042-6458107 28 9.2
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 9.2
>06_03_1502 +
30616070-30616182,30617524-30617752,30618777-30618881,
30618961-30619063,30619150-30619342,30619627-30619678
Length = 264
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = -1
Query: 480 LSLHIFAIAGYWISWHADSMLAARYSSLIRSLTSLSPRNSFTNFDDISLSE 328
+S IF + I ++ A R + L+R +T L PRNSFTN+D+ L E
Sbjct: 37 MSNEIFNVVLDEIIVDLNNRFAERSTRLLRCITCLDPRNSFTNYDEDKLIE 87
>11_02_0063 +
7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 429 DSMLAARYSSLIRSLTSLSPRNSFTNFDDISLSE 328
++ A R + L+R + L PRNSF NFD+ L E
Sbjct: 680 NNRFAERSTQLLRCIACLDPRNSFANFDEDKLIE 713
>11_02_0062 -
7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 429 DSMLAARYSSLIRSLTSLSPRNSFTNFDDISLSE 328
++ A R + L+R + L PRNSF NFD+ L E
Sbjct: 856 NNRFAERSTQLLRCIACLDPRNSFANFDEDKLIE 889
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 75 FSIWRAKIKAGVLNLNYIRNDDKHVCCLSTVSNVPL 182
F+IW ++K + N+ R DK VCCL S + L
Sbjct: 759 FNIWFEQVKKSGVRANFKREHDKKVCCLGLTSLISL 794
>11_06_0339 -
22488214-22488254,22488339-22488829,22490233-22490405,
22492232-22492287,22492814-22492997,22494045-22494078,
22494326-22494390,22494710-22494843,22495066-22495201
Length = 437
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 405 SSLIRSLTSLSPRNSFTNFDDISLSE 328
+ L+R + L PRNSF N+D+ L E
Sbjct: 263 TQLLRCIACLDPRNSFANYDEDKLIE 288
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -1
Query: 405 SSLIRSLTSLSPRNSFTNFD 346
S L+ ++SL+PRNSF+NFD
Sbjct: 628 SELLVCMSSLNPRNSFSNFD 647
>08_02_0854 - 21905054-21906308,21906396-21907300
Length = 719
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -1
Query: 405 SSLIRSLTSLSPRNSFTNFD 346
S L+ ++SL+PRNSF+NFD
Sbjct: 629 SELLVCMSSLNPRNSFSNFD 648
>07_03_0163 +
14588041-14588266,14588835-14589001,14589880-14590068,
14590193-14590315,14590531-14590793,14590882-14590976,
14591529-14591965,14592461-14592481
Length = 506
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -1
Query: 405 SSLIRSLTSLSPRNSFTNFD 346
S L+ ++SL+PRNSF+NFD
Sbjct: 465 SELLVCMSSLNPRNSFSNFD 484
>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
Length = 798
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -1
Query: 405 SSLIRSLTSLSPRNSFTNFD 346
S L+ ++SL+PRNSF+NFD
Sbjct: 628 SELLVCMSSLNPRNSFSNFD 647
>03_06_0566 +
34760991-34761186,34761283-34761455,34762370-34762416,
34762546-34762640,34762734-34762816,34763331-34763399,
34763874-34764059,34764374-34764508,34764774-34764908,
34765148-34765218,34765393-34765470,34765626-34765767,
34765940-34766050
Length = 506
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 374 LKDVKDLINEEYLAASIESACHDIQYPAIAKICKDNTA 487
L+ + DL+NE + + S+ C + + K+C+DN A
Sbjct: 402 LQKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGA 439
>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
Length = 1274
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 148 FAVCLLSLTFLCCTNLSFARQVPKNVLRDHKYGAR 252
F CL SL+ CC NL +P +V H G R
Sbjct: 1022 FLPCLTSLSICCCDNLRELFVLPPSVTHIHVSGCR 1056
>12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404
Length = 335
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 405 SSLIRSLTSLSPRNSFTNFD 346
S L+ ++SL+P NSF+NFD
Sbjct: 301 SELLVCMSSLNPHNSFSNFD 320
>10_07_0124 -
13085820-13085997,13086235-13086362,13086475-13086550,
13086726-13086803,13086985-13087064,13087411-13087480,
13087730-13087887,13088225-13088315,13088379-13088455,
13088612-13088686,13088798-13089071,13089911-13090041,
13090154-13090323,13090413-13090971,13091077-13091127
Length = 731
Score = 28.3 bits (60), Expect = 7.0
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = -1
Query: 570 VVTHADDFAHCLGRCVRFENVCM*FSKWAVLSLHIFAIAGYWISWHADSMLAARYSSLIR 391
+V DD C G V E V M S+W V+ + IF + G + A L + L R
Sbjct: 281 IVVVIDDLEQCSGD-VLGELVMM-LSEW-VIKIPIFFVMGIATTLDAPRKLLSS-EDLQR 336
Query: 390 ----SLTSLSPRNSFTNF-DDISLSETSGFCFSHTVAV 292
LT SP + + I + +GFC SH VAV
Sbjct: 337 LEPCKLTLGSPSDRMNALVEAILVKPCAGFCISHEVAV 374
>09_02_0349 -
7632140-7632234,7632348-7632449,7632864-7632962,
7633517-7633622,7633897-7633978,7634068-7634178,
7634259-7634510,7634596-7635688,7636157-7636829,
7636920-7637117
Length = 936
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 285 PTAPHSAPRFNSRTILVVP*HILRYLSRKRQICTTKE 175
P P+ A RFN TIL V + R++ +R +C ++
Sbjct: 805 PEIPYIAQRFNDTTILNVAADLCRFI--RRDVCNARD 839
>09_02_0131 - 4693828-4694019,4694107-4694199,4694294-4694375,
4694465-4694575,4694656-4694907,4694993-4697196
Length = 977
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 303 TVAVQCPTAPHSAPRFNSRTILVVP*HILRYLSRKRQICTTK 178
T + + P P+ A RFN TIL V + R++ +R +C +
Sbjct: 910 TTSNRIPEIPYIAQRFNHTTILNVAADLCRFI--RRDVCNAR 949
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = -1
Query: 348 DDISLSETSGFC---FSHT--VAVQCPTAPHSAPRFNSRTILVVP*HILRYLSRKRQICT 184
D + ++ + FC F T + P P+ A RFN TIL V + R++ +R +C
Sbjct: 742 DKMDVNLVAAFCLMQFHETDRTGAKIPEIPYIAQRFNHTTILNVAADLCRFI--RRDVCN 799
Query: 183 TK 178
+
Sbjct: 800 AR 801
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 434 CHDIQYPAIAKICKDNTAHFENYIHTFSNRT 526
CHDI++P +A + + AH Y F+ T
Sbjct: 133 CHDIRFPELAMLYRSRGAHLICYPSAFNMST 163
>04_03_0434 +
15889712-15889797,15890086-15890287,15891184-15891323,
15891420-15891559,15891762-15891913,15892773-15892902,
15892990-15893141
Length = 333
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 75 FSIWRA---KIKAGVLNLNYIRNDDKHVCCLSTVSNVPL 182
F++W ++K + N+ R DK VCCL S + L
Sbjct: 122 FNLWFGMLQQVKKSGIRANFKREHDKKVCCLGLTSLISL 160
>11_01_0772 - 6455042-6458107
Length = 1021
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 156 LSTVSNVPLLYKFVVCATSTEE 221
L+++S +PLLY ++CA+ EE
Sbjct: 824 LASLSKMPLLYSLLLCASDEEE 845
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 223 HSSVLVAQTTNLYNKGTLETVDKQQTCLSSLRM*FKFNTPALILALQI 80
HSS QTT L N+ + + +QQT + + M K ++PA++ A +
Sbjct: 100 HSSQQSQQTTTLRNQ---QQISQQQTARTPVSMAQKLDSPAVLKATNV 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,369,709
Number of Sequences: 37544
Number of extensions: 463583
Number of successful extensions: 1307
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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