Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20075
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   40   0.002
SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)                31   1.3  
SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)                31   1.3  
SB_10385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)                      29   3.1  
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           29   5.4  
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             28   9.4  

>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 637 QLLGKSRCTWGPSYWCSNF*HWAENATLRLHCINRVW 747
           + +G  RC +GP+YWC +  H A+      HC N VW
Sbjct: 355 KFVGNPRCVYGPAYWCRSLEH-AQECDAVEHCKNSVW 390



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 230 GTTSMVRELKRGAECGAVGHCTATVWE 310
           G     R L+   EC AV HC  +VW+
Sbjct: 365 GPAYWCRSLEHAQECDAVEHCKNSVWK 391


>SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)
          Length = 352

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 323 PAFVSPTQSPYSVQPRRIQPPALTLAPYLWS 231
           P FV+P   P +++P+ ++P  L +AP LW+
Sbjct: 53  PTFVTPRIEPQTIEPQPMEP--LRMAPNLWN 81


>SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)
          Length = 175

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 520 SNTSAETMCKIVGMCN-NMKLDNIISLNKKSTNVPVKHKDQLLGKSRCTWGPSYWCSN 690
           +NT   T+CK +G+C+ N  L     L+K      +  K   L    C  G  YWC++
Sbjct: 38  ANTDPTTLCKEIGLCSANQHLMKAKILSKHILKAKIVAKRDDL----CYLGAPYWCAD 91


>SB_10385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 672 RTPSTTGFSKELIFMLDGHVGAFLVQRNNIVQFHVVTHADDFAHCLGRCVRF 517
           R P TTG +    +   G + AF +  N I+++ + T AD  A  L  C  F
Sbjct: 86  RVPKTTGSAYAYSYYTVGEIWAFFIGWNLILEYMIGTAAD--ARALSGCFDF 135


>SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)
          Length = 457

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 520 SNTSAETMCKIVGMCN-NMKLDNIISLNKKSTNVPVKHKDQLLGKSRCTWGPSYWCSN 690
           +NT   T+CK +G+C+ N  +     L+K      +  K   L    C  G  YWC++
Sbjct: 373 ANTDPTTLCKEIGLCSANQHVMKAKILSKHILKAKIVAKRDDL----CYLGAPYWCAD 426


>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = +1

Query: 589 ISLNKKSTNVPVKHKDQLLG-----KSRCTWGPSY-WCSNF*HWAENATLRLHCINRVWS 750
           I    K  ++ V+ K+ LL      KS C   P+  W   + HW  +  L LHC +R  S
Sbjct: 63  IDFKGKKFSLNVQGKEVLLSTNRYPKSGCLANPALGWYVTWLHWGPDKLLTLHCSSRTGS 122


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 456 RSRRYAKTTRPISKITYIRSQIEH 527
           R RRY  T +P+S+I Y+R  +EH
Sbjct: 7   RQRRYRATGKPVSQIYYVR--LEH 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,399,365
Number of Sequences: 59808
Number of extensions: 567388
Number of successful extensions: 1528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)