Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20075
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06580.1 68416.m00764 galactokinase (GAL1) identical to galac...    29   2.5  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    28   5.8  
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote...    28   5.8  
At5g47540.1 68418.m05869 Mo25 family protein similar to MO25 pro...    28   7.7  
At5g42610.1 68418.m05187 hypothetical protein contains Pfam doma...    28   7.7  
At5g13620.1 68418.m01578 expressed protein ; expression supporte...    28   7.7  
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot...    28   7.7  
At2g31660.1 68415.m03865 importin beta-2 subunit family protein ...    28   7.7  
At1g11520.1 68414.m01323 pliceosome associated protein-related c...    28   7.7  

>At3g06580.1 68416.m00764 galactokinase (GAL1) identical to
           galactokinase (Galactose kinase) [Arabidopsis thaliana]
           SWISS-PROT:Q9SEE5
          Length = 496

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 374 LKDVKDLINEEYLAASIESACHDIQYPAIAKICKDNTA 487
           LK + DL+NE + + S+   C   +   + ++CK+N A
Sbjct: 392 LKKLGDLMNESHYSCSVLYECSCPELEELVQVCKENGA 429


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 693 KITAPIRRTPSTTGFSKELIFMLDGHVGAFLVQRNNIVQFHVVTHADDFAHCLGRCVRFE 514
           ++   +R+    T  S++   M + HVGA  ++ N+IV+     HA +  H     VR E
Sbjct: 209 RVKDSLRKKEDITSSSRDETPMKEDHVGAAQLRGNDIVEKVSDNHASEKGHDKSNKVRRE 268


>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 744

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -2

Query: 578 NFMLLHMPTILHIVSADVFDLRTYVCNFRNGPCCLCIS-SRSQDTGYRGTPIRCSQPDIP 402
           + +LLH+PT++  ++ D   L ++  +  N P  +  + +   +T    T + C++  IP
Sbjct: 11  HLLLLHLPTLIQALNTDGVALLSFKYSILNDPLLVLRNWNYDDETPCSWTGVTCTELGIP 70

Query: 401 H 399
           +
Sbjct: 71  N 71


>At5g47540.1 68418.m05869 Mo25 family protein similar to MO25
           protein (early mouse development protein family) [Mouse]
           SWISS-PROT:Q06138
          Length = 344

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 320 PDVSDNEISSKFVKLFRGLKDVKDLINEEYLAASIESAC 436
           PD+ D++   K  +L R ++D+K ++     A  +  AC
Sbjct: 33  PDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEAC 71


>At5g42610.1 68418.m05187 hypothetical protein contains Pfam domain,
           PF04678: Protein of unknown function, DUF607
          Length = 293

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +1

Query: 424 RIGVPRYPVSCDREDMQRQHGPFRKLHTYVLKSNTSAETMCKIVGMCNNMKLDNIISLNK 603
           R  + +  + C R D+ +QH  FR+L  Y +K +    T      +      D I+ +  
Sbjct: 4   RRAITKRLIDCYRSDVTQQHSFFRQLSPYNMKIHRQYMTSPNGPNL-----TDRIVGIRI 58

Query: 604 KSTNVPVKHKDQLLGKS 654
           +S + P + +  ++G S
Sbjct: 59  ESVSPPRREETPVMGLS 75


>At5g13620.1 68418.m01578 expressed protein ; expression supported
           by MPSS
          Length = 301

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 621 GHVGAFLVQRNNIVQFHVVTHADDFAHCLGRCVRFENVCM 502
           G V   +V  N++  F + T AD+   CL  C+ +EN  M
Sbjct: 54  GLVSNLIVNFNSLPDFFINTVADEVVMCLS-CLSYENFSM 92


>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
            similar to Brefeldin A-inhibited guanine
            nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
            contains Pfam profile PF01369: Sec7 domain
          Length = 1698

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 602  RKAPTCPSSIKISSLENPVVLGVLRIGAVIFST-GPRM 712
            +KA   P+  K  +L+NPV++ V+R G+   ST GP M
Sbjct: 937  KKALGFPNLKKKGALQNPVMMAVVRGGSYDSSTIGPNM 974


>At2g31660.1 68415.m03865 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 75  FSIWRAKIKAGVLNLNYIRNDDKHVCCLSTVSNVPL 182
           F + + K K+G L  N+ R  DK VCCL   S + L
Sbjct: 825 FQMLQQKRKSG-LPANFKREHDKKVCCLGLTSLLAL 859


>At1g11520.1 68414.m01323 pliceosome associated protein-related
           contains similarity to spliceosome associated protein
           SAP 145 GI:1173904 from [Homo sapiens]
          Length = 196

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 493 RKLHTYVLKSNTSAETMCKIVGMCNNMKLDNI 588
           R  HTYV+K+ T  +T  K V +    K D +
Sbjct: 139 RTTHTYVIKTGTQDKTGTKRVDLLRGQKTDRV 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,285,583
Number of Sequences: 28952
Number of extensions: 379183
Number of successful extensions: 1061
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)