Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20074
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    49   7e-07
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    33   0.046
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    26   5.3  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   9.2  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    25   9.2  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   9.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.2  

>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 22/47 (46%), Positives = 26/47 (55%)
 Frame = +2

Query: 125 ELQDFLIQEKQKAQFQAQIHEFNSFCWDKCIEKPGAKLDSRTENVSQ 265
           EL  F+  E+QK + Q  IH+F S CW KCI   G KLD   E   Q
Sbjct: 19  ELSKFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQ 65



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +1

Query: 244 SDRKCITNCVERFIDTSLLITNRFAQMLEKGG 339
           S+ +C+ NCVERF+D +  I  R+A  LEK G
Sbjct: 59  SEEQCLQNCVERFLDCNFHIIKRYA--LEKFG 88


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 32.7 bits (71), Expect = 0.046
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 101 PSPKGADSELQDFLIQEKQKAQFQAQIHEFNSFCWDKCIEKPGAKLD 241
           PS +   S     + QE   AQ    I + N  C+DKCI +PG+  D
Sbjct: 12  PSSEDKKSIFMKQIRQELAVAQAGELISKINENCFDKCIPEPGSTFD 58



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 5/30 (16%), Positives = 20/30 (66%)
 Frame = +1

Query: 244 SDRKCITNCVERFIDTSLLITNRFAQMLEK 333
           +++ C++ C+ER++D   +++  +   +++
Sbjct: 60  NEKSCVSKCMERYMDAWNIVSRTYISRMQR 89


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 122 SELQDF-LIQEKQKAQFQAQIHEFNSFCWDKCIEKPG 229
           SE+ D  L +EK +AQF A+  + N F    C   PG
Sbjct: 3   SEISDLSLAKEKSEAQFIARNPKSNDFHCKACDSLPG 39


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/46 (19%), Positives = 26/46 (56%)
 Frame = +2

Query: 143 IQEKQKAQFQAQIHEFNSFCWDKCIEKPGAKLDSRTENVSQTVWKD 280
           I  +Q ++F+  I+++N+  W++  +   A+   +  +V +  W++
Sbjct: 52  ILTRQPSEFEKSIYKYNAELWNELSDPLPAEFYFKKGSVGEKDWQE 97


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 567 DMHYSLCVTNNNYMLKFRFPSLNMQNNYYYTTTVKQS 457
           D+ YSL  +     + +   S N  NNYY + T+  S
Sbjct: 215 DVPYSLKASFKRGNIDYNLDSYNSTNNYYSSPTMAPS 251


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 510 PSLNMQNNYYYTTTVKQSIVN 448
           PS ++ +  YYT   KQS++N
Sbjct: 372 PSFDVWDREYYTARYKQSLIN 392


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 104 SPKGADSELQDFLIQEKQKAQFQAQIHEFN 193
           SPKG    ++D++     K  F AQ  EFN
Sbjct: 100 SPKGYSDLIRDYVDYLLDKLSFHAQHPEFN 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,128
Number of Sequences: 5004
Number of extensions: 51843
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)