Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20074
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1396 - 26742694-26742915,26743736-26743771 42 3e-04
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 32 0.33
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 29 2.4
11_01_0184 - 1444246-1444434,1446291-1446719 29 4.1
12_02_1259 - 27382639-27384284,27386570-27386612 28 7.2
04_04_0572 - 26321059-26321510,26321629-26321824 28 7.2
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 28 7.2
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 28 7.2
02_05_0323 - 27928385-27928534,27930326-27930430 28 7.2
>08_02_1396 - 26742694-26742915,26743736-26743771
Length = 85
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 116 ADSELQDFLIQEKQKAQFQAQIHEFNSFCWDKCI-EKPGAKLDS 244
ADS L L QE+QKA + + S CWDKCI PG+K S
Sbjct: 15 ADSYLNITLQQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSS 58
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 256 CITNCVERFIDTSLLITNRF 315
C+TNC +RF+D S++I RF
Sbjct: 63 CLTNCAQRFLDMSVIIAKRF 82
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 116 ADSELQDFLIQEKQKAQFQAQIHEFNSFCWDKCI 217
++ LQ L +EK+KA + + CWDKCI
Sbjct: 7 SNPRLQAMLEEEKRKAMANEFVAKLTDVCWDKCI 40
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 486 YYYTTTVKQSIVNSNLLIYFYTNINLKFSL 397
YY K SI+ SNL Y Y I+ K+S+
Sbjct: 1002 YYKKALTKGSILRSNLSTYLYKRISKKYSI 1031
>11_01_0184 - 1444246-1444434,1446291-1446719
Length = 205
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 146 QEKQKAQFQAQIHEFNSFCWDKCI 217
+EK+KA + + CWDKCI
Sbjct: 144 EEKRKAMANEFVAKLTDVCWDKCI 167
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 244 SDRKCITNCVERFIDTSLLITNR 312
S+ C++NC +RF + +LI R
Sbjct: 178 SEASCLSNCAKRFFELKMLIVQR 200
>12_02_1259 - 27382639-27384284,27386570-27386612
Length = 562
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 489 NYYYTTTVKQSIVNSNLLIYFYTNINLKFSL 397
N+YY T +V++ L+IY +NIN L
Sbjct: 167 NWYYFTFTIAMMVSATLIIYLQSNINWAIGL 197
>04_04_0572 - 26321059-26321510,26321629-26321824
Length = 215
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +3
Query: 99 FLVQKVQIPNFRIS*YKKNKRHSSKHRYTNLIVSVGTSVLKNLELSWTLGPKMYHKLCGK 278
F +++ P+ + Y + S+ R ++ G + + ++ TLGPK+Y + GK
Sbjct: 20 FGIEEPDFPSEGAAAYHAEAKSSATARTSSRFGRTGDRLAQGIKEHVTLGPKLYETMKGK 79
Query: 279 I 281
+
Sbjct: 80 L 80
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 208 QVY*KTWS*AGLSDRKCITNCVERFIDTSLLITNRFAQMLEKGGGMH*CVKYLKLSVSVH 387
Q + K S GLS + + N V + I L+ N + M+ G+ C+++ K+ ++H
Sbjct: 341 QFWNKNKSMEGLSAKSVVLNFVCQLIIFLYLLDNETSWMILGSSGIGVCIEFWKIGKAMH 400
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 486 YYYTTTVKQSIVNSNLLIYFYTNINLKFSL 397
YY K SI+ SNL Y Y I+ K+S+
Sbjct: 1007 YYKKALPKGSILRSNLSTYLYKPISKKYSI 1036
>02_05_0323 - 27928385-27928534,27930326-27930430
Length = 84
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 98 FPSPKGADSELQDFLIQEK-QKAQFQAQ--IHEFNSFCWDKCIEKPGAKLD-SRTENVSQ 265
F S G+ + + Q K Q AQ AQ + + C+ KC+ KPG+ L S + +S+
Sbjct: 4 FSSSSGSPPNTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSESSCISR 63
Query: 266 TV 271
V
Sbjct: 64 CV 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,878,183
Number of Sequences: 37544
Number of extensions: 267885
Number of successful extensions: 508
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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