Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20074
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28) 63 2e-10
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_27219| Best HMM Match : Cad (HMM E-Value=4) 30 1.4
SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19) 28 5.6
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 28 5.6
SB_7129| Best HMM Match : E-MAP-115 (HMM E-Value=0.066) 27 9.7
>SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)
Length = 143
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +2
Query: 119 DSELQDFLIQEKQKAQFQAQIHEFNSFCWDKCIEKPGAKLDSRTE 253
D L+ L+ E+QKA+FQ Q+H+F CWDKC++KPG KLD +TE
Sbjct: 67 DPALRQELMIEEQKAKFQMQVHKFTDTCWDKCMDKPGNKLDGKTE 111
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/29 (62%), Positives = 25/29 (86%)
Frame = +1
Query: 256 CITNCVERFIDTSLLITNRFAQMLEKGGG 342
C+ NCVERFIDT+LLIT RF +++++ GG
Sbjct: 113 CLVNCVERFIDTTLLITKRFGELVQRSGG 141
>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 57.6 bits (133), Expect = 8e-09
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +2
Query: 119 DSELQDFLIQEKQKAQFQAQIHEFNSFCWDKCIEKPGAKLDSRTE 253
D +LQ L E +KA+FQ +H CW+KC++KPG KLD +TE
Sbjct: 7 DPQLQQMLQIEGEKAKFQTIVHSLTEMCWEKCVDKPGQKLDGKTE 51
Score = 31.1 bits (67), Expect = 0.79
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 256 CITNCVERFIDTSLLITNRFAQM 324
C+ NCV RF+DTS ++ R M
Sbjct: 53 CLANCVNRFLDTSNMLVQRLDNM 75
>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
Length = 297
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = -3
Query: 573 STDMHYSLCV--TNNNYMLKFRFPSLNMQN--NYYYTTTVKQSI-VNSNLLIYFYTNINL 409
S D++YS+ V + N Y + S+N+ N YY+ V S+ V ++ +Y+ N+
Sbjct: 47 SIDVYYSVTVYYSINVYYSVNVYYSINVYYSINVYYSVNVYYSVNVYYSVNVYYSVNVYY 106
Query: 408 KFSLYYFMN*N*KFQIFYT 352
++YY +N ++Y+
Sbjct: 107 SINVYYSVNVYYSVNVYYS 125
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = -3
Query: 573 STDMHYSLCV--TNNNYMLKFRFPSLNMQN--NYYYTTTVKQSI-VNSNLLIYFYTNINL 409
S +++YS+ V + N Y + S+N+ N YY+ V SI V ++ +Y+ N+
Sbjct: 65 SVNVYYSINVYYSINVYYSVNVYYSVNVYYSVNVYYSVNVYYSINVYYSVNVYYSVNVYY 124
Query: 408 KFSLYYFMN*N*KFQIFYT 352
++YY +N ++Y+
Sbjct: 125 SVNVYYSVNVYYSVNVYYS 143
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = -3
Query: 573 STDMHYSLCV--TNNNYMLKFRFPSLNMQNNY--YYTTTVKQSI-VNSNLLIYFYTNINL 409
S D++YS+ V + N Y + S+++ + YY+ TV SI V ++ +Y+ N+
Sbjct: 17 SIDVYYSVNVYYSINVYYSVNVYYSIDVYYSIDVYYSVTVYYSINVYYSVNVYYSINVYY 76
Query: 408 KFSLYYFMN*N*KFQIFYT 352
++YY +N ++Y+
Sbjct: 77 SINVYYSVNVYYSVNVYYS 95
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 489 NYYYTTTVKQSI-VNSNLLIYFYTNINLKFSLYYFMN*N*KFQIFYTSMHSAP 334
N YY+ V S+ V ++ +Y+ N+ ++YY + ++Y+ S P
Sbjct: 109 NVYYSVNVYYSVNVYYSVNVYYSVNVYYSVNVYYSVTVYYSINVYYSRFKSNP 161
>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 573 STDMHYSLCVTNNNYMLKFRFPSLNMQNNYYYTTTV 466
+T HY++ +T +Y + S + + YYTTT+
Sbjct: 80 ATTQHYNITLTTRHYTITLMTRSHSRHQHTYYTTTL 115
>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
Length = 584
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 228 PGFSIHLSQQKLLNSCICAWN 166
PG+SIH + K + + +C WN
Sbjct: 251 PGYSIHSVKSKTVRNPVCKWN 271
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 80 KMSDIDFPSPKGADSELQDFLIQEKQKAQFQAQIHEFNSFCWD---KCIEKPGAKLDSRT 250
K S ++ P DS L++ L+Q ++ Q + E+N F WD + I+ D R
Sbjct: 937 KSSSVELPD----DSRLRE-LVQGRKYVDSQMTLSEYNPFTWDTTSRLIDSHVTSFDLRD 991
Query: 251 ENVSQTV 271
E ++ V
Sbjct: 992 ERGNEIV 998
>SB_7129| Best HMM Match : E-MAP-115 (HMM E-Value=0.066)
Length = 432
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 68 QQNTKMSDIDFPSPKGADSELQ-DFL-IQEKQKAQFQAQIHE 187
+Q +S+ ++PSP G SE DFL ++ K +++ + IHE
Sbjct: 127 RQLQTLSNRNYPSPSGMGSEKSGDFLSVEVKARSRRSSSIHE 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,256,462
Number of Sequences: 59808
Number of extensions: 356458
Number of successful extensions: 736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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