Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20074
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF150086-1|AAD39993.1|   83|Caenorhabditis elegans small zinc fi...    40   0.002
AC024765-4|AAF60525.1|   83|Caenorhabditis elegans Human ddp rel...    40   0.002
U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine rece...    31   0.70 

>AF150086-1|AAD39993.1|   83|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 83

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +2

Query: 116 ADSELQDFLIQ---EKQKAQFQAQIHEFNSFCWDKCIE--KPGAKLDSRTENVSQ 265
           AD +L  FL Q   E Q+ +F  Q+H     CWD C    +P +K+D +T+   Q
Sbjct: 4   ADPQLNRFLQQLQAETQRQKFTEQVHTLTGRCWDVCFADYRPPSKMDGKTQTCFQ 58


>AC024765-4|AAF60525.1|   83|Caenorhabditis elegans Human ddp
           related protein 1 protein.
          Length = 83

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +2

Query: 116 ADSELQDFLIQ---EKQKAQFQAQIHEFNSFCWDKCIE--KPGAKLDSRTENVSQ 265
           AD +L  FL Q   E Q+ +F  Q+H     CWD C    +P +K+D +T+   Q
Sbjct: 4   ADPQLNRFLQQLQAETQRQKFTEQVHTLTGRCWDVCFADYRPPSKMDGKTQTCIQ 58


>U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine
           receptor, class v protein30 protein.
          Length = 323

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = -3

Query: 528 MLKFRFPSLNMQNNYYYTTTVKQSIVNSNLLIYFYTNINLK 406
           ++K RF S   Q+ +Y T  ++ SI +  ++I++ TN+ L+
Sbjct: 30  LIKLRFHSKTYQSTFY-TILMQHSIADIGIMIFYTTNLGLR 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,659
Number of Sequences: 27780
Number of extensions: 286609
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)