Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20074
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.8  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   7.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   7.6  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 474 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 382
           +++  + +++N   Y Y N N    LYY +N
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 474 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 382
           +++  + +++N   Y Y N N    LYY +N
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 474 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 382
           +++  + +++N   Y Y N N    LYY +N
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 474 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 382
           +++  + +++N   Y Y N N    LYY +N
Sbjct: 83  SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 507 SLNMQNNYYYTTTVKQSIVNSNLL 436
           S N  NNYY     K+   N N +
Sbjct: 310 SCNYSNNYYNNNNYKKLYYNINYI 333


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
          protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 79 CILLSIVFLNLKYSTKLHKV 20
          C LL  VF   KY+TK   V
Sbjct: 12 CFLLGEVFSEDKYTTKYDNV 31


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
          protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 79 CILLSIVFLNLKYSTKLHKV 20
          C LL  VF   KY+TK   V
Sbjct: 12 CFLLGEVFSEDKYTTKYDNV 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,464
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)