Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20074
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50810.1 68418.m06295 mitochondrial import inner membrane tra...    44   1e-04
At1g61570.1 68414.m06938 mitochondrial import inner membrane tra...    30   1.5  

>At5g50810.1 68418.m06295 mitochondrial import inner membrane
           translocase (TIM8) identical to mitochondrial import
           inner membrane translocase subunit Tim8 [Arabidopsis
           thaliana] Swiss-Prot:Q9XGY4; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 77

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 125 ELQDFLIQEKQKAQFQAQIHEFNSFCWDKCI-EKPGAKLDS 244
           EL  FL QEK++A     + +  S CWDKCI   PG+K  S
Sbjct: 10  ELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSS 50


>At1g61570.1 68414.m06938 mitochondrial import inner membrane
           translocase (TIM13) identical to mitochondrial import
           inner membrane translocase subunit Tim13 [Arabidopsis
           thaliana] Swiss-Prot:Q9XH48; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 87

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +2

Query: 83  MSDIDFPSPKGADSELQDFLIQEKQKAQF-QAQIHEF----NSFCWDKCIEKPGAKL-DS 244
           M     P   G+ S +   ++ E  K Q  QA   E      + C+DKC+ KPG+ L  S
Sbjct: 1   MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 245 RTENVSQTV 271
            +  +S+ V
Sbjct: 61  ESSCISRCV 69



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 220 KTWS*AGLSDRKCITNCVERFIDTSLLIT 306
           K  S  G S+  CI+ CVER+++ + +I+
Sbjct: 52  KPGSSLGGSESSCISRCVERYMEATAIIS 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,411
Number of Sequences: 28952
Number of extensions: 242701
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)