Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20073
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8SV02 Cluster: Putative uncharacterized protein ECU07_...    36   1.1  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   7.4  

>UniRef50_Q8SV02 Cluster: Putative uncharacterized protein
           ECU07_0900; n=1; Encephalitozoon cuniculi|Rep: Putative
           uncharacterized protein ECU07_0900 - Encephalitozoon
           cuniculi
          Length = 372

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -3

Query: 114 RNALLLHGRNRQGGGTYPCGLARHSTTKNHR 22
           RNALL+HG N  G  TY  GLA H + + +R
Sbjct: 114 RNALLVHGFNGSGNSTYMRGLAGHLSREGYR 144


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 82  AGWWYLPVRTCKTFYHQKSSSLSCIT 5
           A WWYLP RT K  YH+   S   +T
Sbjct: 569 AEWWYLPARTHKRSYHRYQCSYCGVT 594


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,368,467
Number of Sequences: 1657284
Number of extensions: 11306797
Number of successful extensions: 23422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23420
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)