Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20073
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   2.2  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   2.2  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   6.8  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   6.8  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 492 RSMHREYKCPMILGFFLLRYNIS 560
           R +HR++ C  + G F+ R+++S
Sbjct: 180 RLLHRDFACRFLSGLFISRFSVS 202


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 541 RKKPRIIGHLYSRCIDRACSSKRYWIP*ILKLNVDVAILIREELKTS 401
           +K+P   G LYS  +D+       WI  I++L   + I+ R+  K S
Sbjct: 32  KKEPGFFGKLYSIFLDKQNDMSLRWIA-IIQLRNSIDIIWRKNTKMS 77


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 294 FFAQELVVSRVESKCGFLHHAYFCR 368
           F    L +  VES C  L H+Y C+
Sbjct: 657 FSKDTLFILNVESPCLMLQHSYHCK 681


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 514 LYSRCIDRACSSKRYWI 464
           LYSRCID AC +  +++
Sbjct: 891 LYSRCIDYACHNIEFFL 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,890
Number of Sequences: 5004
Number of extensions: 46759
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)