Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20073
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41399| Best HMM Match : TP2 (HMM E-Value=3.2)                       29   4.1  
SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)         28   5.4  
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)          28   7.1  
SB_42806| Best HMM Match : MORN (HMM E-Value=0)                        27   9.4  

>SB_41399| Best HMM Match : TP2 (HMM E-Value=3.2)
          Length = 365

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 498 MHREYKCPMILGFFLLR 548
           + REYKCPM++ F L+R
Sbjct: 274 IQREYKCPMLVNFTLVR 290


>SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)
          Length = 609

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 402 QVSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVL 304
           Q+  N Y  +  DRNT GGG   Y + DL   L
Sbjct: 217 QIHINGYDIIRSDRNTRGGGVCIYIKSDLSHTL 249


>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
          Length = 418

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 421 REELKTSGIT*PVPKTFSRQKYAWWRNPHLLSTRLTTSSCAKKKS 287
           REE++T+ I  P P  F R     W   HL+  R+   SC++  S
Sbjct: 156 REEVQTNSIKYPFPARFVRVHPVSW---HLICMRVELYSCSEDGS 197


>SB_42806| Best HMM Match : MORN (HMM E-Value=0)
          Length = 778

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -3

Query: 507 HGALTARVVLNVIGS-HRY*NSTWMSRS*YGRSSKLQVSPNRYLKLFRDRNTHGGGTRTY 331
           HG    R VL      H Y +  W++   +G + ++    N Y   ++D   HG G+  +
Sbjct: 165 HGKRHGRGVLKYDREGHSYYDGHWLNNMRHGYARRVYKGGNVYEGDWKDNLRHGDGSMHW 224

Query: 330 FQHD 319
           +  D
Sbjct: 225 YDRD 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,236,425
Number of Sequences: 59808
Number of extensions: 368302
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)