Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20073
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 232 RAPPDVKWLPESINIYNVNAATHLATKVSLLI 137
           R PPD  W P+ +   N +    +  K ++LI
Sbjct: 102 RLPPDKVWKPDIVLFNNADGNYEVRYKSNVLI 133


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 181 VNAATHLATKVSLLITAVPPL 119
           VNA+T +   VSL++ A+ P+
Sbjct: 180 VNASTGMGGPVSLVVQAMDPM 200


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 145 VRP*SQGGWRHLRCRCLWTP 204
           V+     GWR LR    WTP
Sbjct: 445 VKSSKSSGWRKLRNIVHWTP 464


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 166 GWRHLRCRCLWTP 204
           GWR LR    WTP
Sbjct: 218 GWRKLRNIVHWTP 230


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 166 GWRHLRCRCLWTP 204
           GWR LR    WTP
Sbjct: 133 GWRKLRNIVHWTP 145


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 324 VESKCGFLHHAYFCRE 371
           V++ C  LHH + C E
Sbjct: 463 VDALCNTLHHWHHCPE 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,111
Number of Sequences: 438
Number of extensions: 3522
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)